View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_low_6 (Length: 394)
Name: NF6677_low_6
Description: NF6677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 2045552 - 2045932
Alignment:
| Q |
18 |
actttgtgtaactctattttattttattaaccattcattctcaataaaaatgctatgaaaatatgaagttccgtcaaaaaacaagtaaagtttgatcaag |
117 |
Q |
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| T |
2045552 |
actttgtgtaactctattttattttattaaccattcattctccataaaaatgctatgaaaatatgaagttcgatccaaagacaagtaaagtttgatcaag |
2045651 |
T |
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| Q |
118 |
aattatctatcgaattcagaaactctcaatatatacatataacatcaatatttaagatcaatcatcttacatatgtctttgtcctatac----tgacacg |
213 |
Q |
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| T |
2045652 |
aactatttatcgaattcagaaactctcaatatata----taacatcaatatttaagatcaatcatcttacatatgtctttgtcctatacgtactgacacg |
2045747 |
T |
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| Q |
214 |
agattgcattcaagtttttcaccttcacaaatttattaatggtagcgatgtttcagtgttaaaaccattgtccatgtctatgccaatgcttcgtagcact |
313 |
Q |
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| T |
2045748 |
agattgcattcaagtttttcaccttcgcaaatttattaatggtagcgatgtttcagtgttaaaaccattgtccatgtctatggcaatgcttcgtagcact |
2045847 |
T |
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| Q |
314 |
ccaagatttctaccataattgcaactcattaacgatttgagtccac------atacttgtttatatacgtaactctttgtctctg |
392 |
Q |
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| T |
2045848 |
ccaagatttctaccataattgtaactcattaacgatttgagtccacatatatatacttgtttatatacgtaactctttgtctctg |
2045932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 383
Target Start/End: Original strand, 2049605 - 2049756
Alignment:
| Q |
231 |
ttcaccttcacaaatttattaatggtagcgatgtttcagtgttaaaaccattgtccatgtctatgccaatgcttcgtagcactccaagatttctaccata |
330 |
Q |
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| T |
2049605 |
ttcaccttctcaaattaat-aatggcattgatgtttcagcgttataaccgttttccgtgtctatgtcaatgctttgtagctcttcataatttttacctta |
2049703 |
T |
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| Q |
331 |
attgcaactcattaacgatttgagtccacatacttgtttatatacgtaactct |
383 |
Q |
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| T |
2049704 |
attgtaactctttaaacatttgagtccacatatttgtttatatacctaactct |
2049756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 389
Target Start/End: Original strand, 2053693 - 2053746
Alignment:
| Q |
336 |
aactcattaacgatttgagtccacatacttgtttatatacgtaactctttgtct |
389 |
Q |
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| T |
2053693 |
aactcattaaatatttgagtccacatatttgtttttataggtaactctttgtct |
2053746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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