View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6677_low_7 (Length: 335)
Name: NF6677_low_7
Description: NF6677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6677_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 6969031 - 6968762
Alignment:
| Q |
1 |
gcttcttccttggaggttctaagtgcttggatcaacctctccaatgatgcctcaacatcttcatcagctaccttaggcatcaagttttcagcaacatcag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6969031 |
gcttcttccttggaggttctaagtgcttggatcaacctctccaatgatgcctcaacatcttcctcagctaccttaggcatcaagttttcagcaacatcag |
6968932 |
T |
|
| Q |
101 |
ccggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataattcattgccaacattttgaatccatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968931 |
ccggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataattcattgccaacattttgaatccatc |
6968832 |
T |
|
| Q |
201 |
aaaaccacagtaagacaactcaatatgcatgtccattcgtccacgacgaatcgaagcttgatcaagtttc |
270 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6968831 |
aaaaccacagtaagacaactcaatatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttc |
6968762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 335
Target Start/End: Original strand, 1000231 - 1000567
Alignment:
| Q |
4 |
tcttccttggaggttctaagtgcttggatcaa--cctctccaatgatgcctcaacatcttcatcagctaccttaggcatcaagttttcagcaacatcagc |
101 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1000231 |
tcttccttagaggttctaagtgcttggatcaaagcctctccaatgatgcctcaacatcttcat-agctaccttaggcatcaagttttcagcaacatcagc |
1000329 |
T |
|
| Q |
102 |
cggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataattcattgccaacattttgaatccatca |
201 |
Q |
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| |||| ||||| |||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |
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| T |
1000330 |
ctgagttatgttggtctcttccaacaagcatcgaaccgtcttgaacaaaggatgagattcaatactcagataactcattgctagcattttgaatccatca |
1000429 |
T |
|
| Q |
202 |
aaaccacagtaagacaactcaat----atgcatgtccattcgtccacgacgaatcgaagcttgatcaagtttccttaactcaatgttagatctaacaatt |
297 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1000430 |
aaaccacaataagacaactcaatatgcatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttccttaactcaatgttagatctaacaatt |
1000529 |
T |
|
| Q |
298 |
tccttaactcaatgtcataaatatcatacttcaaaaaa |
335 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
1000530 |
tccttaactcaatgtcataaatatcatacttcaaaaaa |
1000567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 51316041 - 51316276
Alignment:
| Q |
4 |
tcttccttggaggttctaagtgctt--ggatcaacctctccaatgatgcctcaacatcttcatcagctaccttaggcatcaagttttcagcaacatcagc |
101 |
Q |
| |
|
|||||||| ||| ||||||| |||| | ||||||||||||||||| | |||||||||||||| || |||||||||||||||||||| |||||||||||| |
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| T |
51316041 |
tcttccttagagcttctaagggcttttgtatcaacctctccaatgaggtctcaacatcttcattagataccttaggcatcaagtttttagcaacatcagc |
51316140 |
T |
|
| Q |
102 |
cggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataattcattgccaacattttgaatccatca |
201 |
Q |
| |
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|| ||||| ||||||||||||||||||| | ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51316141 |
tggtgtcatattagtctcttccaacaagcatctaatcgtctcgagcaaaaaatgagattcaagactcagataattcattgccaacattttgaatccatca |
51316240 |
T |
|
| Q |
202 |
aaaccacagtaagacaactcaatatgcatgtccatt |
237 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||| |
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|
| T |
51316241 |
aaaccacaataagacaattcaatatgcatatccatt |
51316276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 2178306 - 2178053
Alignment:
| Q |
17 |
ttctaagtgcttggatcaacctctccaatgatgcctcaacatcttcatcagctaccttaggcatcaagttttcagcaacatcagccggagtcatgttagt |
116 |
Q |
| |
|
||||||||||||| ||||||||| ||||| | | |||||||||||| | ||||||| |||||||| ||||||||||||||||| || ||||| ||||| |
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|
| T |
2178306 |
ttctaagtgcttgaatcaacctcaacaatggagtcgcaacatcttcattatctacctttggcatcaaattttcagcaacatcagctggtgtcatattagt |
2178207 |
T |
|
| Q |
117 |
ctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataattcattgccaacattttgaatccatcaaaaccacagtaagac |
216 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||| |||| | |
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| T |
2178206 |
ctctaccaacaagcatgcaatcttgtcgaacaaaaaatgagattcaagactcagatacttcgttgccaacattttgaatccatcaaaacaacaataaggc |
2178107 |
T |
|
| Q |
217 |
aactcaatatgcatgtccattcgtccacgacgaatcgaagcttgatcaagtttc |
270 |
Q |
| |
|
|| || ||| |||||||||||| ||| |||| ||| |||| |||||||||||| |
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| T |
2178106 |
aattcgataagcatgtccattcttcctcgacaaattaaagcatgatcaagtttc |
2178053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 6968439 - 6968405
Alignment:
| Q |
301 |
ttaactcaatgtcataaatatcatacttcaaaaaa |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
6968439 |
ttaactcaatgtcataaatatcatacttcaaaaaa |
6968405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 2842843 - 2842791
Alignment:
| Q |
76 |
ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa |
128 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |
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|
| T |
2842843 |
ggcatcaaattttcagcaacatcagcaggtgtcatattagtctcttccaacaa |
2842791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 2829437 - 2829385
Alignment:
| Q |
76 |
ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa |
128 |
Q |
| |
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|||||||| ||||||||||||||||| || ||||| ||||||| ||||||||| |
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| T |
2829437 |
ggcatcaaattttcagcaacatcagcaggtgtcatattagtcttttccaacaa |
2829385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 2832777 - 2832829
Alignment:
| Q |
76 |
ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa |
128 |
Q |
| |
|
|||||||| || |||||||||||||| || ||||| ||||||||| ||||||| |
|
|
| T |
2832777 |
ggcatcaaattctcagcaacatcagcaggtgtcatattagtctctcccaacaa |
2832829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 2909484 - 2909536
Alignment:
| Q |
76 |
ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa |
128 |
Q |
| |
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|||||||| || |||||||||||||| || ||||| ||||||||| ||||||| |
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| T |
2909484 |
ggcatcaaattctcagcaacatcagcaggtgtcatattagtctctcccaacaa |
2909536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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