View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_high_11 (Length: 365)
Name: NF6681_2D_high_11
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 21243006 - 21242683
Alignment:
| Q |
19 |
cttagctgtgcgtatgttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatcca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21243006 |
cttagctgtgcgtatgttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacattgtttaattccccagctaaatcatcatcca |
21242907 |
T |
|
| Q |
119 |
tgtttatcatcaacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatc |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242906 |
tgtttatcatcaacgacgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatc |
21242807 |
T |
|
| Q |
219 |
ggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcatta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242806 |
ggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcatta |
21242707 |
T |
|
| Q |
319 |
cctattagatataaagtttgttat |
342 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
21242706 |
cctattagatataaagtttgttat |
21242683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 21258772 - 21258459
Alignment:
| Q |
19 |
cttagctgtgcgtatgttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatcca |
118 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || ||||||||| |||||||||||||||| |
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| T |
21258772 |
cttagctgcgcgtatgttataaccgccaatctaaacacatgaaacatcggtaaaacgcagaggaacacatt---taattcccctgctaaatcatcatcca |
21258676 |
T |
|
| Q |
119 |
tgtttatcatcaacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatc |
218 |
Q |
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||||||||||||| || | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||| | || |
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| T |
21258675 |
tgtttatcatcaatgaagtcgcgatgaagttcttgtgggtgagtatcacacctttgctcactcctgtagttcctgatgagtacagaagt-------tgtc |
21258583 |
T |
|
| Q |
219 |
ggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcatta |
318 |
Q |
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||||||||||| | | ||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||| | |||| ||||||||| |
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| T |
21258582 |
agtctgtttcacgttgctttctggtatttctgttacttccccagctgattctatcaacgcctcaaaactcgtgaagttcgaatttcaacctgttgcatta |
21258483 |
T |
|
| Q |
319 |
cctattagatataaagtttgttat |
342 |
Q |
| |
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||||| |||||||||||||||||| |
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| T |
21258482 |
cctatcagatataaagtttgttat |
21258459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 21254269 - 21253939
Alignment:
| Q |
19 |
cttagctgtgcgtatgttataaccgccaatccaaacacatgaa---acatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcat |
115 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |
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| T |
21254269 |
cttagctgcgcgtatgttataaccaccaatctaaacacatgaataaacatcggtaaaacgcagaagaacacgttgtttaattcccctgctaaatcatcgt |
21254170 |
T |
|
| Q |
116 |
ccatgtttatcatcaacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgt |
215 |
Q |
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||||||| ||||| |||| | || |||| ||||||||| || || ||||| || |||||||||||||| ||||||||||||||||| | |||||||| |
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| T |
21254169 |
ccatgttaatcattaacgccaccgcaatgacgttcttgtgggtaagtatcacgcccttgctcactcctgttgttcctgatgagtacaacaaagccgctgt |
21254070 |
T |
|
| Q |
216 |
atcggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgc- |
314 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||| |||||||||||| |||||||||| | |
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| T |
21254069 |
atcgctttgtttcacatcgttttctggtaattctgttacttctcatgctgtttcaatcaacgactcaaaactggtgaagtttgaatttgaacccgttaca |
21253970 |
T |
|
| Q |
315 |
---attacctattagatataaagtttgttat |
342 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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| T |
21253969 |
ttaattacctattagatgtaaagtttgttat |
21253939 |
T |
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