View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_high_15 (Length: 324)
Name: NF6681_2D_high_15
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 51034544 - 51034238
Alignment:
| Q |
1 |
tgactgtggacaattaaaatagctttataactagtgacacaattgtcttcaatgattcgttgttgctttcatcatcttctccggacaataacaataaagg |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| |
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| T |
51034544 |
tgactgtggacaattaaaatagctttataaccagtgacacaattgtcttcaatgattcgttcttgctttcatcatctttcctggacaataacaataaagg |
51034445 |
T |
|
| Q |
101 |
aaatgttaaccagtgtcttcgatg-ttatctgttaggaaaataaatatagtagta---tattgaaacttgtgtaattagtttcttaaaaatgtaaaagtg |
196 |
Q |
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|||||||||||||| ||||||||| ||||| ||| | |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
51034444 |
aaatgttaaccagtatcttcgatgattatcagtttgaaaaataaatatagtagtaatgtattaaaacttgtgtaattaatttcttaaaaatgtaaaagtg |
51034345 |
T |
|
| Q |
197 |
tttgttttcagcataaaacnnnnnnnnattgctaccttaaccatgctccaagagtaccaatacgtagctttttgttcgttacaataatatagaaccaata |
296 |
Q |
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|||||||||| | |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51034344 |
tttgttttcaacttaaaactttttttt-tagctaccttaaccatgctccaagagtaccaatacgtagc-ttttgttcgttacaataatatagaaccaata |
51034247 |
T |
|
| Q |
297 |
tgattttat |
305 |
Q |
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||||||||| |
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| T |
51034246 |
tgattttat |
51034238 |
T |
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