View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_high_20 (Length: 305)
Name: NF6681_2D_high_20
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 27548504 - 27548234
Alignment:
| Q |
14 |
gatgaacaaataagcattcattcatactaaagttctgttattttgttaattatattcccaagaataaaacctaggactgaccatgtgcttaagagactac |
113 |
Q |
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| T |
27548504 |
gatgaacaaataagcattgat----actaaagttctgatattttgttaattatatttccaagaattaaacctaggaccgaccatgtgcttaagagactac |
27548409 |
T |
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| Q |
114 |
ccttctaccctattaagtcaaatgccaaaggcaggacccataccaacaatatctctctcatacgaattgatccaagaattaaacctaggaccggccacgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||| ||| || |
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| T |
27548408 |
ccttctaccctattaagtcaaatgccaaaggcaggacccataccaacaatatttttctcatacgcaatgatccaagaattaaacctaggaccgaccatgt |
27548309 |
T |
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| Q |
214 |
gcttaagagaacccatccccttgtacttgcacagatacatgtcagtacactcccagttccttttatattcataaa |
288 |
Q |
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|||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27548308 |
gcttaagagatccgatccccttgtacttgcacaaatacatgtcagtacactcccagttccttttatattcataaa |
27548234 |
T |
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