View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_high_29 (Length: 248)
Name: NF6681_2D_high_29
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 6480209 - 6480033
Alignment:
| Q |
56 |
tcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgt |
155 |
Q |
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| T |
6480209 |
tcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgt |
6480110 |
T |
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| Q |
156 |
gaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgttagggagaacataatcgattgtgctgatg |
232 |
Q |
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| T |
6480109 |
gaatgatgtctgagtggaagaagacatcgtacttgttgtggtttttgttagggagagcgtaatcgattgtggtgatg |
6480033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 6489346 - 6489519
Alignment:
| Q |
56 |
tcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgt |
155 |
Q |
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| T |
6489346 |
tcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtctatttgtgatcattgtgt |
6489445 |
T |
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| Q |
156 |
gaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgttagggagaacataatcgattgtgctgatg |
232 |
Q |
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| T |
6489446 |
gaatgatgtctgagtgaaagaagacatcgtac---ttgtgagttttgttagggagagcataaccgattgtggtgatg |
6489519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 6480203 - 6480263
Alignment:
| Q |
1 |
atgttgagtgtctcttcatcaaccgcagcagtgtgtccccc-cagctgctgtccgttcaac |
60 |
Q |
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| T |
6480203 |
atgttgagtgtctcttcatcaaccgcagtggtgtgtcccccgcagttgctgtccgttcaac |
6480263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 6489352 - 6489292
Alignment:
| Q |
1 |
atgttgagtgtctcttcatcaaccgcagcagtgtgtcc-ccccagctgctgtccgttcaac |
60 |
Q |
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| T |
6489352 |
atgttgagtgtctcttcatcaaccgcatcggtgtgtcccccccagctgatgtccgttcaac |
6489292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 51946945 - 51946769
Alignment:
| Q |
56 |
tcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgt |
155 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51946945 |
tcaacatctaagccgacaaggaagctattgttgttttcgtatggtttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgt |
51946846 |
T |
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| Q |
156 |
gaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgttagggagaacataatcgattgtgctgatg |
232 |
Q |
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| T |
51946845 |
gaatgatgtctgagtggaagaagacatcgtgcttgttgtgagttttattagggacagcgtaatcgattgtggtgatg |
51946769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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