View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_high_30 (Length: 244)
Name: NF6681_2D_high_30
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 54221036 - 54221251
Alignment:
| Q |
18 |
gaaaaagggtatggaaaaaagggaatgaatgagattccggtaaagatctgttctcgtcatctcatgtcttccaacatagattctaatttaacttccttaa |
117 |
Q |
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| T |
54221036 |
gaaaaagggtatggaaaaaagggaatgaatgagattccggtaaagatctgttcttgtcatctcatgtctttcaacatagattctaatttaacttccttaa |
54221135 |
T |
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| Q |
118 |
attctgcttttcattgttgatcctg-------catctagcaaatctattgaaacatacacttaggacaagtgccttaagcgttgttatgaaagttgtttt |
210 |
Q |
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| T |
54221136 |
attctgcttttcattgttgatcctgatgtccccatctagcaaatctattgaaacatacacttaggacaagtgccttaagcgttgtcatgaaagttgtttt |
54221235 |
T |
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| Q |
211 |
gccactctgttatgct |
226 |
Q |
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|||||||||||||||| |
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| T |
54221236 |
gccactctgttatgct |
54221251 |
T |
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