View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_high_38 (Length: 214)
Name: NF6681_2D_high_38
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 35291150 - 35291063
Alignment:
| Q |
1 |
actcaactaacagccacaccgagtaggtcgacagacacagatagtatagtagatgtatttgctttgtatgtttatgtaggtatataca |
88 |
Q |
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| T |
35291150 |
actcaactaacagccacaccgagtaggtcgacagacacagatagtatagtagatgtgtttgctttgtatgtttatgtaggtatataca |
35291063 |
T |
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Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 35291061 - 35290984
Alignment:
| Q |
119 |
aatatactttatattatgtctcagtaatgataagtgctgatctatagatattggtaatcatgtaacctgtgtaataca |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35291061 |
aatatactttatattatgtctcagtaatgataagtgctgatctatagatattggtaatcatgtaatctgtgtaataca |
35290984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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