View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_high_4 (Length: 568)
Name: NF6681_2D_high_4
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 245 - 557
Target Start/End: Complemental strand, 36396488 - 36396176
Alignment:
| Q |
245 |
catcatagactatgtcgtcttcactctcgtctggtaaactttggtttaattaattaatgttgactttattggtttagacggtttctactttctagaatca |
344 |
Q |
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| T |
36396488 |
catcatagactatgtcgtcttcactctcgtctggtaaactttggtttaattaattaatgttgactttattggtttagacggtttctactttctagaatca |
36396389 |
T |
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| Q |
345 |
aattaaccatcatggactattctttgttctaagtatatagacatgcaattgttgactttttggttcaatcctcacgcaagtcattataaaaaagaagggt |
444 |
Q |
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| T |
36396388 |
aattaaccatcatggactattctttgttctaagtatatagacatgcaattgttgactttttggttcaatcctcacgcaagtcattataaaaaagaagggt |
36396289 |
T |
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| Q |
445 |
catgcaagacatctaagatagatacacggtagtgaatcttaatcatcaactactaatcatttgaaagaaggtacttcttacaaactacgttatcttctgt |
544 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36396288 |
catgcaagacatctaagatagatacacgatagtgaatcttaatcatcaactactaatcatttgaaagaaggtacttcttacaaactacgttatcttctgt |
36396189 |
T |
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| Q |
545 |
cgatcattttctt |
557 |
Q |
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| T |
36396188 |
cgatcattttctt |
36396176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 36396689 - 36396517
Alignment:
| Q |
22 |
atagggtccagctcgagaatcattttttagaaaaagagaaagtgtccacagtgaatgaatttcaacggcaatacgcgtaagttagactccatttgatatt |
121 |
Q |
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| T |
36396689 |
atagggtccagctcgagaatcattttttagaaaaagagaaagtgtccacagtgaatgaatttcaacggcaatacgcgtaagttagactccatttgatatt |
36396590 |
T |
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| Q |
122 |
tcaatgttgctaataagaacctttttgtcaacagatattagagtatttagctaatgtttgagtaggatatgaa |
194 |
Q |
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| T |
36396589 |
tcaatgttgctaataagaacctttttgtcaacagatattagagtatttagctaatgtttgagtaggatatgaa |
36396517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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