View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_high_6 (Length: 434)
Name: NF6681_2D_high_6
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 41786340 - 41786749
Alignment:
| Q |
1 |
caaagtgataggtggatctattctcgcagaaaaaacagttagaaatgtttacaaaa-gaaatacaaacacctgcaatgcaagcaagactcaagagccact |
99 |
Q |
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| T |
41786340 |
caaagtgataggtggatctattatcgcagaaaaaacagttagaaatgtttacaaaaagaaatacaaacacctgcaacgcaagcaagactcaagagccact |
41786439 |
T |
|
| Q |
100 |
ctttatgccttttacacattcgttaaatccaaatctgcaaaacagttttaatatttccaaataatggtttatagaatagaatagtaatacttacaactaa |
199 |
Q |
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| T |
41786440 |
ctttat-ccttttacacattcgttaaatccaaatctgcaaaacagttttaatatttccaaataatggtttatagaatagaatagtaatacttacaactaa |
41786538 |
T |
|
| Q |
200 |
agtgatgtttgtatcctgactctcatcctcatcaattgatattttcaaatatttcttttatttaatgtaactcttcgaaatttaacatattagtgacatt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41786539 |
agtgatgtttgtatcctgactctcatcctcatcaattgatattttcaaatatttcttttatgtaatgtaactcttcgaaatttaacatattagtgacatt |
41786638 |
T |
|
| Q |
300 |
gtgagaaaatagagtgtggaagagacactgtgatatgctttagaattttcccttaa-ttaatagttgagaaaagagttatttcgacaatctaaaacttgt |
398 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41786639 |
gtgagaaaatagagtgtggaagatacactgtgatatgctttagaattttcccttaatttaatagttgagaaaagagttatttcgacaatctaaaacttgt |
41786738 |
T |
|
| Q |
399 |
ctaatacggta |
409 |
Q |
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| T |
41786739 |
ctaatacggta |
41786749 |
T |
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