View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_1 (Length: 780)
Name: NF6681_2D_low_1
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 244 - 615
Target Start/End: Original strand, 33252113 - 33252483
Alignment:
| Q |
244 |
taatatttttaattttggattatagttttatctaaggaagcaatatattgaattgaagaagttatatcttgaaattttgtagtgataaggaa-gggtaag |
342 |
Q |
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| T |
33252113 |
taatatttttaattttggattatagttttatctaaggaagcaatatattgaattaaagaagttatatcttgaaattttgcagtgataaggaaagggtaag |
33252212 |
T |
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| Q |
343 |
gctttcgatctattggaatatcgtcatatgaaactcacgagttaagaaaaggagtcattctactcaaaatataggatgttgcaattatatttgcattgag |
442 |
Q |
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| T |
33252213 |
gctttcgatctattcgaatatcgtcatatgaaactcacgagttaagaaaaggagtcattctactcaa--tataggatgttgcaattatatttgcattgag |
33252310 |
T |
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| Q |
443 |
gtttatcagtaatctttataaacttggttcattgtggccaataaccttgggagtatgaaatacctttttaattagaataagagtaaactcatgtaagtag |
542 |
Q |
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| T |
33252311 |
gtttatcagtaatctttataaacttggttcattgtggccaataaccttgggagtatgaaatacctttttaattagaataagagtaaactcatgtaagtag |
33252410 |
T |
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| Q |
543 |
aatggaatgaaaggtattgggaatcatattcttggacggtggggtcatattgatgcaaccatcttaattatta |
615 |
Q |
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| T |
33252411 |
aatggaatgaaaggtattaggaatcataatcttggacggtggtgtcatattgatgcaaccatcttaattatta |
33252483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 33251841 - 33252114
Alignment:
| Q |
20 |
attatgatatcattgaatggaaaagataatcaactaacgagtaaaatcatttctctaagatatccgttctttccactacttcctttatttacaagccctc |
119 |
Q |
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| T |
33251841 |
attatgatatcattgaatggaaaagataatcaactaacgagtaaaatcatttctctaagatatcctttctttccactacttcctttatttacaagccctc |
33251940 |
T |
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| Q |
120 |
acttcccgtccactcaaatggagccttagtgtattatacatagaaaactcagtgcaaagatgatcaaaatatctaaagtaaatttgagactagaaggagt |
219 |
Q |
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| T |
33251941 |
acttcccgtccactcaaatggagccttaatgtattatacataggaaactcagtgcaaagatgatcaaaatatctaaagtaaatttgagactagaaggagt |
33252040 |
T |
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| Q |
220 |
tgaacaagtgaaagatgga---aatattaatatttttaattttggattatagttttatctaaggaagcaatata |
290 |
Q |
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| T |
33252041 |
tgaacaagtgaaagatggaaagaatattaatatttttaattttggattatagttttatctaaggaagcaatata |
33252114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 687 - 770
Target Start/End: Original strand, 33252889 - 33252972
Alignment:
| Q |
687 |
tcatgttacaaaaaagatgatatcttcattatttacattatgtggttgaaacaagtatatataatccatccttgatgtccatct |
770 |
Q |
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| T |
33252889 |
tcatgttacaaaaaagatgatatcttcattatttacattatgtggttgaaacaagtatatataatccatcctttatgtacatct |
33252972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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