View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6681_2D_low_11 (Length: 479)

Name: NF6681_2D_low_11
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6681_2D_low_11
NF6681_2D_low_11
[»] chr2 (13 HSPs)
chr2 (164-354)||(18589393-18589584)
chr2 (61-145)||(18589190-18589274)
chr2 (356-461)||(18589696-18589801)
chr2 (62-169)||(15972866-15972975)
chr2 (64-172)||(2438673-2438783)
chr2 (88-163)||(5367213-5367288)
chr2 (62-166)||(30404810-30404916)
chr2 (87-172)||(20242681-20242766)
chr2 (116-172)||(19942314-19942370)
chr2 (111-163)||(42205799-42205850)
chr2 (115-172)||(35056927-35056984)
chr2 (116-172)||(27084318-27084374)
chr2 (62-163)||(38117122-38117225)
[»] chr6 (19 HSPs)
chr6 (62-172)||(33001243-33001355)
chr6 (62-164)||(7977792-7977896)
chr6 (62-172)||(17841543-17841655)
chr6 (62-172)||(34595127-34595239)
chr6 (87-166)||(7377999-7378078)
chr6 (62-172)||(23771572-23771683)
chr6 (62-172)||(28152092-28152203)
chr6 (64-135)||(30851597-30851668)
chr6 (62-135)||(19040345-19040420)
chr6 (62-162)||(9658872-9658974)
chr6 (62-131)||(7265588-7265659)
chr6 (69-162)||(28715295-28715390)
chr6 (68-172)||(24645479-24645586)
chr6 (62-163)||(853822-853925)
chr6 (99-135)||(5626687-5626723)
chr6 (62-135)||(8776964-8777039)
chr6 (69-126)||(9025494-9025553)
chr6 (61-126)||(9107370-9107437)
chr6 (62-154)||(12696317-12696416)
[»] chr4 (14 HSPs)
chr4 (62-172)||(2361929-2362041)
chr4 (62-172)||(23292940-23293052)
chr4 (62-172)||(12895228-12895340)
chr4 (115-166)||(34306764-34306815)
chr4 (62-172)||(49431018-49431131)
chr4 (64-128)||(4672083-4672149)
chr4 (67-163)||(8423681-8423779)
chr4 (85-135)||(40179627-40179677)
chr4 (85-135)||(54580014-54580064)
chr4 (66-172)||(21945500-21945608)
chr4 (114-163)||(27988828-27988876)
chr4 (62-127)||(15029758-15029825)
chr4 (75-172)||(28964202-28964301)
chr4 (115-163)||(34589666-34589714)
[»] scaffold0083 (1 HSPs)
scaffold0083 (85-163)||(45493-45571)
[»] chr1 (20 HSPs)
chr1 (85-163)||(51410043-51410121)
chr1 (62-172)||(22515841-22515953)
chr1 (61-132)||(13436450-13436523)
chr1 (62-163)||(2896084-2896187)
chr1 (62-163)||(29163344-29163447)
chr1 (62-159)||(46348350-46348449)
chr1 (83-173)||(1815273-1815363)
chr1 (69-172)||(40181871-40181976)
chr1 (62-124)||(17754304-17754368)
chr1 (62-172)||(37598825-37598936)
chr1 (62-172)||(42359403-42359515)
chr1 (87-147)||(30749860-30749920)
chr1 (87-147)||(30771311-30771371)
chr1 (62-172)||(1486658-1486775)
chr1 (62-133)||(36878454-36878527)
chr1 (62-132)||(19058850-19058922)
chr1 (114-163)||(32461416-32461465)
chr1 (62-135)||(13997876-13997951)
chr1 (62-135)||(22881607-22881682)
chr1 (62-135)||(38078652-38078727)
[»] chr5 (12 HSPs)
chr5 (62-172)||(28588628-28588740)
chr5 (115-172)||(39698600-39698657)
chr5 (64-172)||(21576699-21576809)
chr5 (97-163)||(30502351-30502417)
chr5 (97-163)||(30542694-30542760)
chr5 (66-172)||(21191010-21191118)
chr5 (86-163)||(43564900-43564977)
chr5 (66-126)||(3966500-3966562)
chr5 (62-132)||(6247615-6247687)
chr5 (61-135)||(16203786-16203862)
chr5 (111-172)||(39268552-39268613)
chr5 (64-135)||(15883982-15884056)
[»] chr3 (18 HSPs)
chr3 (68-172)||(40993289-40993396)
chr3 (64-172)||(55401070-55401180)
chr3 (61-131)||(25093494-25093566)
chr3 (67-132)||(7928448-7928515)
chr3 (62-132)||(16000010-16000082)
chr3 (62-172)||(18426942-18427054)
chr3 (62-163)||(10954945-10955048)
chr3 (87-159)||(13845492-13845564)
chr3 (62-163)||(26492168-26492271)
chr3 (87-146)||(2941578-2941637)
chr3 (62-126)||(34185123-34185189)
chr3 (70-154)||(45451554-45451640)
chr3 (95-137)||(29090103-29090145)
chr3 (62-132)||(8383250-8383322)
chr3 (121-166)||(11155088-11155133)
chr3 (87-135)||(8789541-8789589)
chr3 (62-127)||(21479111-21479178)
chr3 (87-147)||(35222958-35223018)
[»] scaffold0053 (1 HSPs)
scaffold0053 (62-171)||(8791-8902)
[»] scaffold0652 (1 HSPs)
scaffold0652 (64-172)||(416-526)
[»] scaffold0050 (1 HSPs)
scaffold0050 (85-172)||(70296-70383)
[»] chr7 (20 HSPs)
chr7 (62-154)||(15680802-15680896)
chr7 (62-134)||(26733297-26733371)
chr7 (61-132)||(21826265-21826338)
chr7 (62-156)||(22484018-22484114)
chr7 (115-172)||(24339701-24339758)
chr7 (87-163)||(5835267-5835343)
chr7 (87-135)||(9482954-9483002)
chr7 (62-138)||(25481895-25481973)
chr7 (97-136)||(26022539-26022578)
chr7 (54-125)||(19206035-19206108)
chr7 (62-161)||(24105671-24105772)
chr7 (62-172)||(20549784-20549896)
chr7 (52-126)||(24339625-24339701)
chr7 (61-131)||(28155562-28155634)
chr7 (87-172)||(32287417-32287502)
chr7 (62-163)||(8234139-8234242)
chr7 (64-172)||(13770686-13770801)
chr7 (69-126)||(18013074-18013133)
chr7 (69-134)||(19213803-19213870)
chr7 (87-135)||(21880172-21880220)
[»] chr8 (16 HSPs)
chr8 (62-131)||(13844591-13844662)
chr8 (62-130)||(31109514-31109584)
chr8 (62-133)||(31236570-31236643)
chr8 (87-147)||(43737790-43737850)
chr8 (87-138)||(4786326-4786377)
chr8 (62-162)||(5813585-5813687)
chr8 (116-163)||(29447062-29447109)
chr8 (115-173)||(29655920-29655978)
chr8 (87-172)||(3025571-3025656)
chr8 (64-126)||(11927086-11927150)
chr8 (115-172)||(22652035-22652092)
chr8 (62-172)||(36450708-36450820)
chr8 (61-126)||(11944657-11944724)
chr8 (128-172)||(11944737-11944781)
chr8 (62-135)||(22595987-22596062)
chr8 (62-131)||(34897078-34897149)
[»] scaffold1528 (1 HSPs)
scaffold1528 (62-124)||(1028-1092)
[»] scaffold0361 (1 HSPs)
scaffold0361 (62-163)||(14523-14623)
[»] scaffold0020 (1 HSPs)
scaffold0020 (55-126)||(135312-135385)
[»] scaffold0512 (1 HSPs)
scaffold0512 (115-172)||(4990-5047)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 164 - 354
Target Start/End: Original strand, 18589393 - 18589584
Alignment:
Q  164 tgaagagtgaagagatacactcaaaagaagctattgtgaggatggaagtgtgtgaagagtgaagacactctaaggaagccattgataatgggcaa-tttg 262  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18589393 tgaagagtgaagagatacactctgaagaagctattgtgagcatggaagtgtgtgaagagtgaagacactctaaggaagccattgataatgggcaactttg 18589492  T
Q  263 atacaagtattattaggaaattaaaatgtattattccaccaagtttaggtgtgggtctatttgtaatcagtacacgaacctggatatgtaag 354  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18589493 atacaagtattattaggaaattaaaatgtattattccactaagtttagatgtgggtctatttgtaatcagtacacgaacctggatatgtaag 18589584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 18589190 - 18589274
Alignment:
Q  61 aacacgccgacactgctaataattaaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgac 145  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  18589190 aacacgccgacactgctaataattagaaaattacacaattcagtctaactatatgtgtcagtgtcggacacgagatgtatctgac 18589274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 356 - 461
Target Start/End: Original strand, 18589696 - 18589801
Alignment:
Q  356 atatatacatacacacacactagtattttcatttgtaaaaactatttgnnnnnnnnnnnagtgatcagtttatttctgcaatttgatatatttagtcggt 455  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||           ||||||| |||||||||||||||||||||||||||||| ||    
T  18589696 atatatatatagacacacactagtattttcatttgtaaaaactatttgtttatttttttagtgatcggtttatttctgcaatttgatatatttagtcagt 18589795  T
Q  456 aactta 461  Q
    ||||||    
T  18589796 aactta 18589801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 15972866 - 15972975
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    ||||||||||||   ||||||||  |||||||||||||||||||| ||| || | ||||||||||||||||||||| || || ||| ||| ||||  |||    
T  15972866 acacgccgacacaattaataatttgaaaaaattacacaattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacacacct 15972965  T
Q  160 aatctgaaga 169  Q
    |||| |||||    
T  15972966 aatccgaaga 15972975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 2438783 - 2438673
Alignment:
Q  64 acgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaa 161  Q
    |||| ||||| ||||||||||  ||||||| ||| |||||||| ||| || | |||||||||||||||||||||  | || ||||||| |||| ||||||    
T  2438783 acgctgacacagctaataatttcaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaa 2438684  T
Q  162 tctgaagagtg 172  Q
    || || |||||    
T  2438683 tccgaggagtg 2438673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 5367213 - 5367288
Alignment:
Q  88 aaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    |||| ||| |||||||| ||| ||||||||||||||||||||||||||  |||| ||| ||| |||| ||||||||    
T  5367213 aaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatatccgactccgggacacgcctaatc 5367288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 30404916 - 30404810
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| | ||||||||  ||||||| ||| |||||||| ||| || | ||||||| |||||||||||||  | || ||||||  |||||||||    
T  30404916 acacgccgacacggttaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggcgtcggacacgacacatgtccgacaccaggacatgcct 30404817  T
Q  160 aatctga 166  Q
    |||||||    
T  30404816 aatctga 30404810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 20242766 - 20242681
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    ||||| ||| |||||||| ||| |||||||||||||||||||||| ||| || ||||||||   |||| |||| ||| ||||||||    
T  20242766 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatccgaagagtg 20242681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 19942314 - 19942370
Alignment:
Q  116 tgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    ||||||||||||||||| ||||| |||||||||| |||| |||||||| || |||||    
T  19942314 tgtcggtgtcggacacggcatgtgtctgacaccgggacacgcctaatccgaggagtg 19942370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 42205850 - 42205799
Alignment:
Q  111 atatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||    
T  42205850 atatgtgtcggtgccggacacgatatgtatctgacaccga-acacgcctaatc 42205799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 35056927 - 35056984
Alignment:
Q  115 gtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    ||||||||||||||||||||| || || ||||| || ||| ||||||||||| |||||    
T  35056927 gtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtg 35056984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 27084318 - 27084374
Alignment:
Q  116 tgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    |||||||||||||||||||| || ||  ||||||||||| |||||||| || |||||    
T  27084318 tgtcggtgtcggacacgacacgtgtccaacaccgagacacgcctaatcggaggagtg 27084374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 38117225 - 38117122
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| ||||||||||  ||||||| ||| | ||| || ||| || | |||| |||||||||||| ||| || || ||||||| |||| ||||    
T  38117225 acacgccgacacagctaataatttgaaaaaatcacatacttcggtgtaattacaagtgttggtgtcggacacaacacgtgtccgacaccgggacacgcct 38117126  T
Q  160 aatc 163  Q
    ||||    
T  38117125 aatc 38117122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 33001355 - 33001243
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||||||||||||||  ||||||| ||| |||| | | ||| |||||||||||||||||||||||||| || ||||||||||| | | ||||    
T  33001355 acacgccgacactgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgtctgacaccgaaatacgcct 33001256  T
Q  160 aatctgaagagtg 172  Q
    ||||  |||||||    
T  33001255 aatccaaagagtg 33001243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 7977896 - 7977792
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| ||||||||||  ||||||||||| |||||||| ||| || | ||||||||||||||||| |||| | || |||| ||| ||| ||||    
T  7977896 acacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcggacacaacatatgtccgacaacgaaacacgcct 7977797  T
Q  160 aatct 164  Q
    |||||    
T  7977796 aatct 7977792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 17841655 - 17841543
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| ||||||||||  ||||||| ||| |||| ||| ||| || | ||| |||||||||||||||||||| || ||||| |||||| ||||    
T  17841655 acacgccgacacagctaataatttgaaaaaatcacataatttagtgtaattacaagtgacggtgtcggacacgacatgtgtccgacactgagacacgcct 17841556  T
Q  160 aatctgaagagtg 172  Q
    |||| || |||||    
T  17841555 aatccgaggagtg 17841543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 34595127 - 34595239
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    ||||||||||||  |||||||||  ||||||| ||| |||||||| ||| || | ||||||||||||||||||||| || |||||||||| ||||  |||    
T  34595127 acacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacct 34595226  T
Q  160 aatctgaagagtg 172  Q
    |||| || |||||    
T  34595227 aatccgaggagtg 34595239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 7377999 - 7378078
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctga 166  Q
    ||||| ||| |||||| | ||| |||||||||||||||||||||||||||| ||| ||||||| |||| | |||||||||    
T  7377999 aaaatcacataattcaatgtaattatatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctga 7378078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 23771572 - 23771683
Alignment:
Q  62 acacgccgacactgctaataatt-aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgccta 160  Q
    |||||||||||| | |||||||| ||||||||| | | |||||| ||| || |  ||||||||||||||||||||||| || ||||| |||||| | |||    
T  23771572 acacgccgacacagttaataatttaaaaaattatatacttcagtgtaattacaaatgtcggtgtcggacacgacatgtgtccgacacagagacacgtcta 23771671  T
Q  161 atctgaagagtg 172  Q
    | ||||||||||    
T  23771672 acctgaagagtg 23771683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 28152092 - 28152203
Alignment:
Q  62 acacgccgacactgctaataatta-aaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgccta 160  Q
    |||||||||||  ||||||||||  |||||| ||| |||||||| ||| || | ||||||||||||||||||||| || || ||||||| |||| |||||    
T  28152092 acacgccgacaaagctaataatttgaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggccta 28152191  T
Q  161 atctgaagagtg 172  Q
    ||| || |||||    
T  28152192 atccgaggagtg 28152203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 30851597 - 30851668
Alignment:
Q  64 acgccgacactgctaataattaaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    ||||||||||||||||||||| || ||   ||||||||| | ||| ||||||||||||||||||||||||||    
T  30851597 acgccgacactgctaataatttaagaaaatcacaattcaatgtaattatatgtgtcggtgtcggacacgaca 30851668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 19040345 - 19040420
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    |||||||||||| ||||||||||  | ||||| ||| |||||||| ||| |||||||||| |||||||||||||||    
T  19040345 acacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgtcggacacgaca 19040420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 9658872 - 9658974
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| ||||||||||  | ||||| ||| |||||||| ||| ||||| |||||||||  ||||||||| || ||||||||||  ||| ||||    
T  9658872 acacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtctgacaccggaacacgcct 9658971  T
Q  160 aat 162  Q
    |||    
T  9658972 aat 9658974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 7265659 - 7265588
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacac 131  Q
    ||||||| |||| ||||||||||  | ||||| ||| |||||||| ||| ||||||||||||||||||||||    
T  7265659 acacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 7265588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 28715295 - 28715390
Alignment:
Q  69 gacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaat 162  Q
    ||||| ||||||||||  ||||||| ||| |||||||| ||| || | ||||||||||||||||||||| || |  ||||||| |||| |||||||    
T  28715295 gacacggctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaat 28715390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 24645479 - 24645586
Alignment:
Q  68 cgacactgctaataatt---aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatct 164  Q
    |||||| ||||||||||   ||||||| ||| |||||||| ||  || | ||||||||||| ||||||||| || || |||||| ||||| | ||||||     
T  24645479 cgacacagctaataatttgaaaaaaatcacataattcagtatagttacaagtgtcggtgtcagacacgacacgtgtccgacaccaagacacgtctaatcc 24645578  T
Q  165 gaagagtg 172  Q
    ||||||||    
T  24645579 gaagagtg 24645586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 853925 - 853822
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    ||||||||||||  |||||||||  ||||||| ||| |||| |||  || || | |||||||||||||| ||||||||| || ||||  |||||| ||||    
T  853925 acacgccgacacaactaataatttgaaaaaatcacataattaagtgcaattacaagtgtcggtgtcggatacgacatgtgtccgacatagagacacgcct 853826  T
Q  160 aatc 163  Q
    ||||    
T  853825 aatc 853822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 5626723 - 5626687
Alignment:
Q  99 ttcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  5626723 ttcagtgtaaatatatgtgtcggtgtcggacacgaca 5626687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 8777039 - 8776964
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    ||||||||||||  |||||||||  ||||||| ||| |||||||| ||| || | |||| ||||||||||||||||    
T  8777039 acacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaattacaagtgttggtgtcggacacgaca 8776964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 9025553 - 9025494
Alignment:
Q  69 gacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcg 126  Q
    ||||||||||||||||  | ||||| ||| |||||||| ||| |||||||||||||||||    
T  9025553 gacactgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 9025494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 9107437 - 9107370
Alignment:
Q  61 aacacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcg 126  Q
    ||||||||||||| ||||||||||  ||||||| ||| |||||||| ||| || | ||||||||||||    
T  9107437 aacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcg 9107370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 12696317 - 12696416
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtc-----ggtgtcggacacgacatgtatctgacaccgagaca 154  Q
    |||||||||||| ||||||||||  ||||||||||| |||||||| ||| || | |||||      ||||||||||||||| || |||||||||| ||||    
T  12696317 acacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcagtgtcgtgtcggacacgacacgtgtctgacaccgggaca 12696416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 2362041 - 2361929
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||| ||||||| ||||||||||  ||||||||||| |||| ||| ||| || | ||||||||||||||||||||  || |||||||||||||||  |||    
T  2362041 acacaccgacacagctaataatttgaaaaaattacataatttagtgtaattaaaagtgtcggtgtcggacacgactcgtgtctgacaccgagacacacct 2361942  T
Q  160 aatctgaagagtg 172  Q
    ||||||| |||||    
T  2361941 aatctgacgagtg 2361929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 23293052 - 23292940
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| ||||||||||  ||||||| ||| |||||||| ||| || | ||||||||||||||||||||| || || ||||||| |||| ||||    
T  23293052 acacgccgacacagctaataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcct 23292953  T
Q  160 aatctgaagagtg 172  Q
    |||| || |||||    
T  23292952 aatccgaggagtg 23292940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 12895340 - 12895228
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    ||||||||||||   ||||||||  ||||||| ||| ||||  || ||| |||| ||||||||||||||||||||||||||| |||| || |||| ||||    
T  12895340 acacgccgacacaaataataatttgaaaaaatcacataattttgtgtaattataagtgtcggtgtcggacacgacatgtatccgacatcgggacacgcct 12895241  T
Q  160 aatctgaagagtg 172  Q
    |||| || |||||    
T  12895240 aatccgaggagtg 12895228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 34306815 - 34306764
Alignment:
Q  115 gtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctga 166  Q
    ||||||||||||||||||||| || || |||||||||||| |||||||||||    
T  34306815 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctga 34306764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 49431018 - 49431131
Alignment:
Q  62 acacgccgacactgctaataatt---aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcc 158  Q
    |||||||||||| ||||||||||   ||||||| ||| |||||||| ||| || | ||||||||||||||||||||| || ||  |||||| |||| |||    
T  49431018 acacgccgacacagctaataatttgaaaaaaatcacataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgcc 49431117  T
Q  159 taatctgaagagtg 172  Q
    | ||| || |||||    
T  49431118 ttatccgaggagtg 49431131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 4672149 - 4672083
Alignment:
Q  64 acgccgacactgctaataattaa--aaaattacacaattcagtctaactatatgtgtcggtgtcgga 128  Q
    |||||||||| ||||||||||    ||||||||| |||||||| || ||||||||||||||||||||    
T  4672149 acgccgacacagctaataatttgggaaaattacataattcagtgtagctatatgtgtcggtgtcgga 4672083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 8423779 - 8423681
Alignment:
Q  67 ccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    ||||||| ||||||||||  | ||||| ||| |||||||| ||| ||||  ||||||||||||||||||||  | || ||||||| |||| ||||||||    
T  8423779 ccgacaccgctaataatttgagaaaatcacataattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatc 8423681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 40179677 - 40179627
Alignment:
Q  85 aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    ||||||| ||| |||||||| ||| |||||| |||||||||||||||||||    
T  40179677 aaaaaatcacataattcagtgtaattatatgcgtcggtgtcggacacgaca 40179627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 54580064 - 54580014
Alignment:
Q  85 aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    ||||||| ||| |||||||| ||| |||| |||||||||||||||||||||    
T  54580064 aaaaaatcacataattcagtgtaattataagtgtcggtgtcggacacgaca 54580014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 21945500 - 21945608
Alignment:
Q  66 gccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    |||||||| ||||||||||  ||||||| ||| |||||||| ||| || | |||||||||||||||| ||||  | || |||||||  ||| ||||||||    
T  21945500 gccgacacagctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacatgacacatgtccgacaccgcaacacgcctaatc 21945599  T
Q  164 tgaagagtg 172  Q
     || |||||    
T  21945600 cgaggagtg 21945608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 27988828 - 27988876
Alignment:
Q  114 tgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    |||||||||||||||||| ||| |||| ||||||| ||||||||||||||    
T  27988828 tgtgtcggtgtcggacaccacaagtatatgacacc-agacatgcctaatc 27988876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 15029758 - 15029825
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcgg 127  Q
    |||||| ||||||||||||||||  |||| || ||| |||||||| ||| ||||||||| ||||||||    
T  15029758 acacgcagacactgctaataatttgaaaatatcacataattcagtgtaattatatgtgttggtgtcgg 15029825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 28964301 - 28964202
Alignment:
Q  75 gctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    ||||||||||  ||||||| ||| |||||||| ||| || | ||||| |||||||||||||||  |||| ||||| | |||| |||||||| || |||||    
T  28964301 gctaataatttgaaaaaatcacataattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtg 28964202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 34589714 - 34589666
Alignment:
Q  115 gtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    ||||| ||||||||||||| | ||||||||||||||| || ||||||||    
T  34589714 gtgtcagtgtcggacacgatacgtatctgacaccgaggcacgcctaatc 34589666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 45571 - 45493
Alignment:
Q  85 aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    |||||| |||| |||||||| ||| || | ||||||||||||||||||||| || |||||||||| |||||||||||||    
T  45571 aaaaaaatacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgcgacatgcctaatc 45493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 51410043 - 51410121
Alignment:
Q  85 aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    ||||||| ||| |||||||| ||| || | ||||||||||||||||||||| ||||| |||||||||||| ||||||||    
T  51410043 aaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatc 51410121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 22515953 - 22515841
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||| ||||| ||||||||||  ||||||| ||| |||| ||| ||| || | |||||||||||||||||||||  |||| |||||||||||| ||||    
T  22515953 acacgcagacacagctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacacgcct 22515854  T
Q  160 aatctgaagagtg 172  Q
    |||| || |||||    
T  22515853 aatccgaggagtg 22515841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 13436450 - 13436523
Alignment:
Q  61 aacacgccgacactgctaataattaaa--aaattacacaattcagtctaactatatgtgtcggtgtcggacacg 132  Q
    |||||||||||||||||||||||| ||  |||| ||| |||||||| ||| ||||||||| |||||||||||||    
T  13436450 aacacgccgacactgctaataatttaaggaaatcacataattcagtgtaattatatgtgttggtgtcggacacg 13436523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 2896187 - 2896084
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| ||||||||||  | ||||| ||| |||||||| || |||||| |||||||||| |||||||||||| || || |||| ||||  |||    
T  2896187 acacgccgacaccgctaataatttgagaaaatcacataattcagtgtagctatatatgtcggtgtcagacacgacatgtgtccgagaccgggacacacct 2896088  T
Q  160 aatc 163  Q
    ||||    
T  2896087 aatc 2896084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 29163447 - 29163344
Alignment:
Q  62 acacgccgacactgctaataattaa--aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| ||||| |||| |  ||||| ||| |||||| | ||| |||||||||||||||||||||||||| ||  ||||||||| |||| | ||    
T  29163447 acacgccgacaccgctaaaaatttaggaaaatcacataattcaatttaattatatgtgtcggtgtcggacacgacacgtgcctgacaccgggacacggct 29163348  T
Q  160 aatc 163  Q
    ||||    
T  29163347 aatc 29163344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 46348449 - 46348350
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| ||||||||||  ||||||| | | |||| ||| ||| || | ||||||||||||||||||||| || || |||||||||||| ||||    
T  46348449 acacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcct 46348350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 1815273 - 1815363
Alignment:
Q  83 ttaaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtga 173  Q
    ||||||||| ||| |||||||| ||| || | ||||||||||| |||||||||  | || ||||||| |||| ||||||||||| ||||||    
T  1815273 ttaaaaaatcacataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagtga 1815363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 40181871 - 40181976
Alignment:
Q  69 gacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctga 166  Q
    ||||||||||||||||  | ||||| ||| |||||||| ||| ||||||| |||||||||||||| ||| || ||  |||||| |||| |||||||| ||    
T  40181871 gacactgctaataatttgagaaaatcacataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatccga 40181970  T
Q  167 agagtg 172  Q
     |||||    
T  40181971 ggagtg 40181976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 17754304 - 17754368
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgt 124  Q
    |||| ||||||| ||||||||||  ||||||||||| |||||||| |||||||||||||| ||||    
T  17754304 acacaccgacaccgctaataatttgaaaaaattacataattcagtgtaactatatgtgtcagtgt 17754368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 37598825 - 37598936
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    ||||||||||||  |||||||||  ||||||| ||| |||||||| ||| |||| ||||||||||||||||||||| || || ||||  | |||| ||||    
T  37598825 acacgccgacacaactaataatttgaaaaaatcaca-aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcct 37598923  T
Q  160 aatctgaagagtg 172  Q
    |||| || |||||    
T  37598924 aatccgaggagtg 37598936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 42359515 - 42359403
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||| |||||  |||||||||  ||||||| ||| |||||||| ||| || | |||||||||||||||| ||| ||| || ||||||| |||| ||||    
T  42359515 acacgctgacacatctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcct 42359416  T
Q  160 aatctgaagagtg 172  Q
    |||| || |||||    
T  42359415 aatccgaggagtg 42359403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 30749860 - 30749920
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacac 147  Q
    ||||| ||| |||||||| ||| |||||||||||||||||||||| |||||| | ||||||    
T  30749860 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacaccacatgtgtttgacac 30749920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 30771311 - 30771371
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacac 147  Q
    ||||| ||| |||||||| ||| |||||||||||||||||||||| |||||| | ||||||    
T  30771311 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacaccacatgtgtttgacac 30771371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 1486775 - 1486658
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcg-----gacacgacatgtatctgacaccgagaca 154  Q
    |||||| ||||| ||||||||||  ||||||| ||| |||||||| ||| |||| ||||||||||||     ||||||||| || || ||||||| ||||    
T  1486775 acacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggaca 1486676  T
Q  155 tgcctaatctgaagagtg 172  Q
     |||||||| || |||||    
T  1486675 cgcctaatccgaggagtg 1486658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 36878454 - 36878527
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacga 133  Q
    |||||||||||| ||||||||||  | ||||| ||| |||||||| ||| |||| ||||||||||| |||||||    
T  36878454 acacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtctgacacga 36878527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 19058922 - 19058850
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacg 132  Q
    |||||||||||| ||||||||||  |||| || ||| |||||||| ||| || | ||||||||||||||||||    
T  19058922 acacgccgacacagctaataatttaaaaagataacataattcagtgtaattacaagtgtcggtgtcggacacg 19058850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 32461465 - 32461416
Alignment:
Q  114 tgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    |||||||||||||||||||||| || |||||||| | |||| ||||||||    
T  32461465 tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatc 32461416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 13997876 - 13997951
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    |||||||||||| | |||| |||  ||||||| ||| |||||||| ||| ||||||||||||||| ||| ||||||    
T  13997876 acacgccgacaccgttaattatttaaaaaaatcacataattcagtgtaattatatgtgtcggtgttggagacgaca 13997951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 22881682 - 22881607
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    ||||||||||||  |||||||||  ||||||| ||| |||| ||| ||| || | |||||||||||||||||||||    
T  22881682 acacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgaca 22881607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 38078727 - 38078652
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    ||||| |||||| ||||||||||  ||||||| ||| |||||| | ||| || | |||||||||||||||||||||    
T  38078727 acacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcggacacgaca 38078652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 28588740 - 28588628
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| | ||||||||  | ||||| ||| |||||||| ||| |||| |||||||||||||||||||||  |||||||||||  |||| || |    
T  28588740 acacgccgacaccggtaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacacgctt 28588641  T
Q  160 aatctgaagagtg 172  Q
    |||| ||||||||    
T  28588640 aatccgaagagtg 28588628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 39698600 - 39698657
Alignment:
Q  115 gtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||| || |||||    
T  39698600 gtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtg 39698657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 21576809 - 21576699
Alignment:
Q  64 acgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaa 161  Q
    ||||| |||| ||||||||||  ||||||| ||| |||||||| ||| || | |||||| |||||||||||||| || |||||||| | |||| ||||||    
T  21576809 acgccaacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaa 21576710  T
Q  162 tctgaagagtg 172  Q
    || || |||||    
T  21576709 tccgaggagtg 21576699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 30502417 - 30502351
Alignment:
Q  97 aattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    |||||||| ||| ||||||||||||||||||||||||||  | || ||||| | |||||||||||||    
T  30502417 aattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatc 30502351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 30542760 - 30542694
Alignment:
Q  97 aattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    |||||||| ||| ||||||||||||||||||||||||||  | || ||||| | |||||||||||||    
T  30542760 aattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatc 30542694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 21191118 - 21191010
Alignment:
Q  66 gccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    |||||||| ||||||||||  ||||||| ||| |||||||| ||| || | ||||||||||||||||| ||| || || ||| ||| |||| ||||||||    
T  21191118 gccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatc 21191019  T
Q  164 tgaagagtg 172  Q
     || |||||    
T  21191018 cgaggagtg 21191010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 43564900 - 43564977
Alignment:
Q  86 aaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    |||||| ||| |||| ||| ||| |||| |||||||||||||||||||||||| || ||| ||| |||| ||||||||    
T  43564900 aaaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatc 43564977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 3966500 - 3966562
Alignment:
Q  66 gccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcg 126  Q
    |||||||| ||||||||||  | ||||| |||||||||||| ||| |||||||||||||||||    
T  3966500 gccgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcg 3966562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 6247615 - 6247687
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacg 132  Q
    ||||||||||||  |||||||||  ||||||| ||| |||||||| ||| || | ||||||||||||||||||    
T  6247615 acacgccgacacatctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacg 6247687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 16203862 - 16203786
Alignment:
Q  61 aacacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    |||| |||||||||||||||||||  | |||||  || |||| ||| ||| ||||||||||||||||||||| ||||    
T  16203862 aacatgccgacactgctaataatttgagaaaatctcataatttagtgtaattatatgtgtcggtgtcggacaagaca 16203786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 39268613 - 39268552
Alignment:
Q  111 atatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    |||||||||||||| ||||||||||||| || ||||| | |||| |||||||| || |||||    
T  39268613 atatgtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtg 39268552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 15883982 - 15884056
Alignment:
Q  64 acgccgacactgctaataatt---aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    |||||||||| || |||||||   ||||||| ||| |||||||| ||| || | |||||||||||||||||||||    
T  15883982 acgccgacacagcaaataatttaaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgaca 15884056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 40993396 - 40993289
Alignment:
Q  68 cgacactgctaataatt---aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatct 164  Q
    |||||| ||||||||||   ||||||| ||| |||||||| ||| ||||||||||||||||||||||||||  | || ||||||| |||| ||||||||     
T  40993396 cgacaccgctaataatttaaaaaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatcc 40993297  T
Q  165 gaagagtg 172  Q
    || |||||    
T  40993296 gaggagtg 40993289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 55401070 - 55401180
Alignment:
Q  64 acgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaa 161  Q
    ||||||||||  |||||||||  ||||||| ||| |||| ||| ||| || | ||||||||||||||||||||| || || |||||||||||| ||||||    
T  55401070 acgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaa 55401169  T
Q  162 tctgaagagtg 172  Q
    || || |||||    
T  55401170 tccgaggagtg 55401180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 25093494 - 25093566
Alignment:
Q  61 aacacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacac 131  Q
    ||||||||||||||| |||| |||  | ||||| |||||||||||| ||| ||||||||||||||||||||||    
T  25093494 aacacgccgacactgttaatgatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacac 25093566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 7928448 - 7928515
Alignment:
Q  67 ccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacg 132  Q
    ||||||| ||||||||||  ||||||| ||| |||||||| ||| |||||||||||||||||||||||    
T  7928448 ccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacg 7928515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 16000082 - 16000010
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacg 132  Q
    ||||||||||||  |||||||||  ||||||| ||| |||||||| |||||| | ||||||||||||||||||    
T  16000082 acacgccgacacaactaataatttaaaaaaataacataattcagtgtaactacaagtgtcggtgtcggacacg 16000010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 18426942 - 18427054
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    ||||||||||||  |||||||||  ||||||| ||| ||||| || ||| ||||| ||||||||||||| |||||| || || | ||||| ||||  |||    
T  18426942 acacgccgacaccactaataatttcaaaaaatcacataattcggtgtaattatatatgtcggtgtcggatacgacacgtgtccggcaccgggacacacct 18427041  T
Q  160 aatctgaagagtg 172  Q
    ||||||| |||||    
T  18427042 aatctgaggagtg 18427054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 10954945 - 10955048
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    ||||||||||||  |||||||||  ||||||| ||| |||||||| |||  | | ||||||||||||||||||||| || || ||||| | |||| ||||    
T  10954945 acacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacactgggacacgcct 10955044  T
Q  160 aatc 163  Q
    ||||    
T  10955045 aatc 10955048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 13845564 - 13845492
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    ||||| ||| ||| |||| ||| |||||||||||||||||||||||| | || |||||||| |||||| ||||    
T  13845564 aaaatcacaaaatgcagtgtaattatatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgcct 13845492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 26492271 - 26492168
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||  ||||||||||  ||||||| | |||||||||| ||| || | || ||||||||||||||||||  | ||||||||| ||||| | ||    
T  26492271 acacgccgacagagctaataatttgaaaaaatcatacaattcagtgtaattacaagtatcggtgtcggacacgacacatgtctgacaccaagacacgtct 26492172  T
Q  160 aatc 163  Q
    ||||    
T  26492171 aatc 26492168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 2941578 - 2941637
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgaca 146  Q
    ||||| ||| ||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  2941578 aaaatcacaaaatacagtgtaattatatgtgtcggtgtcggacacgacacgtgtctgaca 2941637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 34185189 - 34185123
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcg 126  Q
    |||||||||||| ||||||||||  ||||||| |||||||||||| ||| || | ||||||||||||    
T  34185189 acacgccgacacggctaataatttcaaaaaatcacacaattcagtgtaattacaagtgtcggtgtcg 34185123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 45451554 - 45451640
Alignment:
Q  70 acactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagaca 154  Q
    |||||||||||||||  | ||||| ||| | |||||| |||  |||||||||||||||||||||||||  | || ||||||||||||    
T  45451554 acactgctaataatttgagaaaatcacatacttcagtataataatatgtgtcggtgtcggacacgacacatgtccgacaccgagaca 45451640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 29090145 - 29090103
Alignment:
Q  95 acaattcagtctaactatatgtgtcggtgtcggacacgacatg 137  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||    
T  29090145 acaattcagtctaactatatatgtcggtctcggacacggcatg 29090103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 8383250 - 8383322
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacg 132  Q
    |||||||||||| ||||||||||  | ||||| | | |||||||| ||| |||| ||||||||||||||||||    
T  8383250 acacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagtgtcggtgtcggacacg 8383322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 11155088 - 11155133
Alignment:
Q  121 gtgtcggacacgacatgtatctgacaccgagacatgcctaatctga 166  Q
    ||||||||||||||| || || |||||||||||||||||| |||||    
T  11155088 gtgtcggacacgacaggtgtcagacaccgagacatgcctactctga 11155133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 8789589 - 8789541
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    ||||| ||| ||||| || ||| ||||||||||||||||||||||||||    
T  8789589 aaaatcacataattccgtgtaattatatgtgtcggtgtcggacacgaca 8789541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 21479111 - 21479178
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcgg 127  Q
    |||||||||||| ||||||||||  ||||||| |||||||||||| ||| ||   |||||||||||||    
T  21479111 acacgccgacacagctaataatttgaaaaaatcacacaattcagtgtaattactagtgtcggtgtcgg 21479178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 35222958 - 35223018
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacac 147  Q
    ||||| ||| |||||| | ||| ||||||||||||||||||||| |||| || ||||||||    
T  35222958 aaaatcacataattcaatgtaattatatgtgtcggtgtcggacatgacacgtgtctgacac 35223018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 171
Target Start/End: Original strand, 8791 - 8902
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| ||||||||||  ||||||| | |  ||| ||| ||| || | ||||||||||||||||||||| || || |||||||||||| ||||    
T  8791 acacgccgacacagctaataatttgaaaaaatcatattatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcct 8890  T
Q  160 aatctgaagagt 171  Q
    ||||||| ||||    
T  8891 aatctgaggagt 8902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 526 - 416
Alignment:
Q  64 acgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaa 161  Q
    |||||||||||||||||||||  ||||||| ||| |||||||| ||| || | ||||||||||||||||||||  || || ||||||| ||||  |||||    
T  526 acgccgacactgctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaa 427  T
Q  162 tctgaagagtg 172  Q
    || || |||||    
T  426 tccgaggagtg 416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 70296 - 70383
Alignment:
Q  85 aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    ||||||| ||| |||||||| ||| |||| ||||||||||||||||||||| || || ||||||  ||||||||||||| || |||||    
T  70296 aaaaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatgagtg 70383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 15680802 - 15680896
Alignment:
Q  62 acacgccgacactgctaataattaaaaaa--ttacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagaca 154  Q
    |||||||||||  ||||||||||||||||  | ||| |||| ||| ||| |||| ||||||||||||||||||||| || || ||||||||||||    
T  15680802 acacgccgacatagctaataattaaaaaaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagaca 15680896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 26733297 - 26733371
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgac 134  Q
    ||||| |||||| ||||||||||  | ||||| ||| |||||||||||| || ||||||||||||||||||||||    
T  26733297 acacgtcgacaccgctaataatttgacaaaatcacataattcagtctaattaaatgtgtcggtgtcggacacgac 26733371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 21826265 - 21826338
Alignment:
Q  61 aacacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacg 132  Q
    |||||||||||||  |||||||||  ||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  21826265 aacacgccgacacgactaataatttaaaaaaatcacataactcagtctaataatatgtgtcggtgtcggacacg 21826338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 22484018 - 22484114
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatg 156  Q
    |||||||||||| ||||||||||  | |||||| || |||||||| ||| |||||||||||||||| |||| ||||  | || |||| |||||||||    
T  22484018 acacgccgacaccgctaataattttagaaaattgcataattcagtataattatatgtgtcggtgtcagacatgacacatgtccgacatcgagacatg 22484114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 24339701 - 24339758
Alignment:
Q  115 gtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    ||||||||||||||||||||| ||||| ||||||| |||| |||||||| || |||||    
T  24339701 gtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtg 24339758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 5835267 - 5835343
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    ||||| ||| |||||||| ||| |||||||||||||||| |||| ||||||| ||||| |||| |||| || |||||    
T  5835267 aaaataacataattcagtgtaattatatgtgtcggtgtcagacatgacatgtgtctgataccgggacacgcttaatc 5835343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 9482954 - 9483002
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    ||||| |||||||||||| ||| |||||||||||||||||||| |||||    
T  9482954 aaaatcacacaattcagtgtaattatatgtgtcggtgtcggacgcgaca 9483002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 25481895 - 25481973
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgt 138  Q
    |||||||||||| ||||||||||  ||||||| ||| |||||||| ||| || | |||| |||||||||||||| ||||    
T  25481895 acacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgtcggacacgatatgt 25481973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 26022578 - 26022539
Alignment:
Q  97 aattcagtctaactatatgtgtcggtgtcggacacgacat 136  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  26022578 aattcagtgtaactatatgtgtcggtgtcgaacacgacat 26022539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 19206035 - 19206108
Alignment:
Q  54 ggacatcaacacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtc 125  Q
    ||||| |||||||||||||| ||||||||||  | ||||| ||| |||||| | ||| ||||||||||||||||    
T  19206035 ggacaccaacacgccgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtcggtgtc 19206108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 24105671 - 24105772
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| ||||||||||  |||||||| ||  ||||||| ||| || | ||||||| ||||| ||| |||||| || ||||||| |||| ||||    
T  24105671 acacgccgacacagctaataatttgaaaaaattgcatgattcagtgtaattacaagtgtcggagtcgggcacaacatgtgtccgacaccgggacacgcct 24105770  T
Q  160 aa 161  Q
    ||    
T  24105771 aa 24105772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 20549784 - 20549896
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||| ||||||| ||||||||||  | ||||| ||  |||||||| ||| |||||||||||||||||||||| |||  | || ||||  |||||| ||||    
T  20549784 acacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcct 20549883  T
Q  160 aatctgaagagtg 172  Q
    |||| || |||||    
T  20549884 aatccgaggagtg 20549896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 24339625 - 24339701
Alignment:
Q  52 atggacatcaacacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcg 126  Q
    ||||||||  |||||||||||| ||||||||||  ||||||| ||| |||||||| ||| || | ||||||||||||    
T  24339625 atggacattgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 24339701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 28155562 - 28155634
Alignment:
Q  61 aacacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacac 131  Q
    ||||||||||||| ||||||||||  | ||||||||| ||||| || ||| || | |||||||||||||||||    
T  28155562 aacacgccgacaccgctaataatttgagaaaattacataattcggtgtaattacaagtgtcggtgtcggacac 28155634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 32287502 - 32287417
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    ||||| ||| ||||||||  || ||||||||||||||||||||| |||| || || ||||||| ||||  ||||||| || |||||    
T  32287502 aaaatcacataattcagtgcaagtatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtg 32287417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 8234139 - 8234242
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||| |||||||  |||||||||  ||||||| ||| |||||||| ||  || | ||| |||||||||||||||||  | || |||||||||||| ||||    
T  8234139 acacaccgacacaactaataatttgaaaaaataacataattcagtgtagttacaagtgccggtgtcggacacgacacatgtccgacaccgagacacgcct 8234238  T
Q  160 aatc 163  Q
    ||||    
T  8234239 aatc 8234242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 13770686 - 13770801
Alignment:
Q  64 acgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcg-----gtgtcggacacgacatgtatctgacaccgagacatg 156  Q
    |||||||||| ||||||||||  ||||||||||| |||||||| ||| || | ||||||     ||||||||||| ||| || || |||||||  ||| |    
T  13770686 acgccgacacagctaataatttaaaaaaattacataattcagtgtaattacaagtgtcgttgtcgtgtcggacacaacacgtgtccgacaccggaacacg 13770785  T
Q  157 cctaatctgaagagtg 172  Q
    ||||||| ||||||||    
T  13770786 cctaatccgaagagtg 13770801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 18013133 - 18013074
Alignment:
Q  69 gacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcg 126  Q
    |||||| |||||||||  ||||||||||| |||||||| ||| |||||||||| ||||||    
T  18013133 gacactactaataatttaaaaaaattacataattcagtgtaattatatgtgtcagtgtcg 18013074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 19213803 - 19213870
Alignment:
Q  69 gacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgac 134  Q
    ||||||||||||||||  ||||||| ||| ||| |||| ||| || | ||||||||||||||||||||    
T  19213803 gacactgctaataattttaaaaaatcacataatgcagtgtaaatacaagtgtcggtgtcggacacgac 19213870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 21880172 - 21880220
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    ||||||||| |||||||| ||| || | |||||||||||||||||||||    
T  21880172 aaaattacataattcagtgtaattacaagtgtcggtgtcggacacgaca 21880220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 13844662 - 13844591
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacac 131  Q
    |||||||||||||||||||||||  | ||||| ||| |||| ||| ||| ||||||||||||||||||||||    
T  13844662 acacgccgacactgctaataatttgagaaaatcacataattgagtgtaattatatgtgtcggtgtcggacac 13844591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 31109584 - 31109514
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggaca 130  Q
    |||||||||||| | ||||||||  | ||||| | ||||||||||||||||||||||||| ||||||||||    
T  31109584 acacgccgacaccgttaataatttgagaaaatcaaacaattcagtctaactatatgtgtcagtgtcggaca 31109514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 31236643 - 31236570
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacga 133  Q
    |||||||||||||||||||||||  | ||||| ||| |||||| | ||| |||||||||||||| |||||||||    
T  31236643 acacgccgacactgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgacggacacga 31236570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 43737850 - 43737790
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacac 147  Q
    ||||| ||| ||| |||| ||| |||||||||||||||||||||||||| || ||||||||    
T  43737850 aaaatcacaaaatacagtgtaattatatgtgtcggtgtcggacacgacaggtgtctgacac 43737790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 4786377 - 4786326
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgt 138  Q
    ||||| ||| |||||||| ||| ||||||||||||||||||| |||||||||    
T  4786377 aaaatcacataattcagtgtaattatatgtgtcggtgtcggatacgacatgt 4786326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 5813585 - 5813687
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    |||||||||||| ||||||||||  ||||| | ||| | || ||| ||| || | ||||||||||||||||||||| || || ||||||| |||| ||||    
T  5813585 acacgccgacacagctaataatttgaaaaagtcacatattttagtgtaaatacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcct 5813684  T
Q  160 aat 162  Q
    |||    
T  5813685 aat 5813687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 29447109 - 29447062
Alignment:
Q  116 tgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatc 163  Q
    ||||||||||||||||||||||| |||||||||  |||| ||||||||    
T  29447109 tgtcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatc 29447062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 29655978 - 29655920
Alignment:
Q  115 gtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtga 173  Q
    ||||| ||||||||||| |||  ||||||||||||| ||| ||||||||||||| ||||    
T  29655978 gtgtcagtgtcggacacaacacatatctgacaccgaaacacgcctaatctgaagtgtga 29655920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 3025571 - 3025656
Alignment:
Q  87 aaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    ||||| ||| |||||||| ||| |||| ||||| ||||||||||||||| || |||||||| | |||| | |||||| || |||||    
T  3025571 aaaatcacataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtg 3025656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 11927150 - 11927086
Alignment:
Q  64 acgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcg 126  Q
    |||||||||||| ||||||||  | ||||| ||| |||||||| ||| |||||||||||||||||    
T  11927150 acgccgacactgttaataatttgataaaatcacataattcagtgtaattatatgtgtcggtgtcg 11927086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 22652035 - 22652092
Alignment:
Q  115 gtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    |||||||||||||||||||||||| || ||||||| |||| | |||||| || |||||    
T  22652035 gtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtg 22652092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 36450820 - 36450708
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    ||||||||||||  |||||||||  ||||||| ||| |||||||| ||| || | |||| |||||||||||||||  || || ||||||  |||| ||||    
T  36450820 acacgccgacacaactaataatttgaaaaaatcacagaattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcct 36450721  T
Q  160 aatctgaagagtg 172  Q
    |||| || |||||    
T  36450720 aatccgaggagtg 36450708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 11944657 - 11944724
Alignment:
Q  61 aacacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcg 126  Q
    ||||||||||||||| ||||||||  | ||||| ||| || ||||| ||| |||||||||||||||||    
T  11944657 aacacgccgacactgttaataatttgataaaatcacataactcagtgtaattatatgtgtcggtgtcg 11944724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 11944737 - 11944781
Alignment:
Q  128 acacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    |||||||||||||| |||||||||||| |||||||| || |||||    
T  11944737 acacgacatgtatccgacaccgagacacgcctaatccgatgagtg 11944781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 22595987 - 22596062
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgaca 135  Q
    |||||||||||| ||||||||||  ||||||| ||| |||||||| ||| || | |||| |||||||||| |||||    
T  22595987 acacgccgacacagctaataatttaaaaaaataacataattcagtgtaattacaagtgttggtgtcggacgcgaca 22596062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 34897078 - 34897149
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacac 131  Q
    ||||| |||||| ||||||||||  | ||||| ||| |||||||| ||| ||||||||||| ||||||||||    
T  34897078 acacgtcgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcggacac 34897149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 1028 - 1092
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgt 124  Q
    |||| ||||||| ||||||||||  ||||||||||| |||||||| |||||||||||||| ||||    
T  1028 acacaccgacaccgctaataatttgaaaaaattacataattcagtgtaactatatgtgtcagtgt 1092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 14523 - 14623
Alignment:
Q  62 acacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcggacacgacatgtatctgacaccgagacatgcct 159  Q
    ||||||||||||  |||||||||  ||||||| ||| |||||||| ||| || | |||   ||||||||||||||| || || |||||||||||| ||||    
T  14523 acacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtg---gtgtcggacacgacacgtgtccgacaccgagacacgcct 14619  T
Q  160 aatc 163  Q
    ||||    
T  14620 aatc 14623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 135385 - 135312
Alignment:
Q  55 gacatcaacacgccgacactgctaataatt--aaaaaattacacaattcagtctaactatatgtgtcggtgtcg 126  Q
    |||| |||||| ||||||||||||||||||  | ||||| ||| ||||| || ||| |||||||||||||||||    
T  135385 gacaccaacacaccgacactgctaataatttgagaaaatcacataattctgtgtaattatatgtgtcggtgtcg 135312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 5047 - 4990
Alignment:
Q  115 gtgtcggtgtcggacacgacatgtatctgacaccgagacatgcctaatctgaagagtg 172  Q
    ||||||||||||||||||||| || || ||||  ||||||||||||||| || |||||    
T  5047 gtgtcggtgtcggacacgacacgtgtccgacattgagacatgcctaatccgaggagtg 4990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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