View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6681_2D_low_13 (Length: 447)
Name: NF6681_2D_low_13
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 15 - 425
Target Start/End: Complemental strand, 44248532 - 44248122
Alignment:
| Q |
15 |
attggtttacggatgttccttcaatttactatgagggtggttcaattatgggttgttttagatgtcatgaatttaaatttaattatactgatattggatt |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248532 |
attggtttacggatgttccttcaatttactatgagggtggttcaattataggttgttttagatgtcatgaatttaaatttaattatactgatattggatt |
44248433 |
T |
|
| Q |
115 |
ttatgttccaatgagaaaggctttaaggactacccttaatagcataattgagaagaaaattgtaagagggaatggaattgatgtaattgtgagaacatac |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248432 |
ttatgttccaatgagaaaggctttaaggactacccttaatagcataattgagaagaaaattgtaagagggaatggaattgatgtaattgtgagaacatac |
44248333 |
T |
|
| Q |
215 |
tcacctactcattttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgcta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248332 |
tcacctactcattttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgcta |
44248233 |
T |
|
| Q |
315 |
agataagaagtattgagatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcatt |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248232 |
agataagaagtattgagatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcatt |
44248133 |
T |
|
| Q |
415 |
attgagaccag |
425 |
Q |
| |
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||||||||||| |
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| T |
44248132 |
attgagaccag |
44248122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 30 - 425
Target Start/End: Original strand, 15284043 - 15284438
Alignment:
| Q |
30 |
ttccttcaatttactatgagggtggttcaattatgggttgttttagatgtcatgaatttaaatttaattatactgatattggattttatgttccaatgag |
129 |
Q |
| |
|
||||||||||||||||||| |||| |||| |||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
15284043 |
ttccttcaatttactatgaaggtgattcagttataggttgttttagatgtcaagaatttaaatttaattatagtgatattggattttatattccaatgag |
15284142 |
T |
|
| Q |
130 |
aaaggctttaaggactacccttaatagcataattgagaagaaaattgtaagagggaatggaattgatgtaattgtgagaacatactcacctactcatttt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| || | ||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
15284143 |
aaaggctttaaggactacccttaatagcataattgagaggaaaatggttaaagggaataaaattgatgtgattgtgagaacatactcacctactcatttt |
15284242 |
T |
|
| Q |
230 |
gaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgctaagataagaagtattg |
329 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15284243 |
gaaggtggttgggataagggtggtacttgttcaaagagagagccatatggaaatgaggagaagaaacttgaaggaatggatgctaagataagaagtgttg |
15284342 |
T |
|
| Q |
330 |
agatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccag |
425 |
Q |
| |
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|||||||||||| |||||||||| | ||||||| ||||| ||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
15284343 |
agatagaggaagtggaaaatgctagggcaaaagctaaacaatttggattaaatttagaggtgcttgatataacaaaattggcattgttgagaccag |
15284438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 92 - 341
Target Start/End: Complemental strand, 15287813 - 15287564
Alignment:
| Q |
92 |
tttaattatactgatattggattttatgttccaatgagaaaggctttaaggactacccttaatagcataattgagaagaaaattgtaagagggaatggaa |
191 |
Q |
| |
|
|||||| ||||| | |||| |||||||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||| ||| | ||| ||| ||| |
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|
| T |
15287813 |
tttaatcatactcaaattgatttttatgttccattaagaaaggctttgaggactacccttaatagtataattgagaggaaagttgctaaaggaaatagaa |
15287714 |
T |
|
| Q |
192 |
ttgatgtaattgtgagaacatactcacctactcattttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaa |
291 |
Q |
| |
|
| ||||| ||||| | ||||| |||||| ||||||||||||||||||||||||||| |||||| |||||||||| | |||| |||| || |||||||| |
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| T |
15287713 |
tagatgtgattgttaaaacattttcacctgctcattttgaaggtgattgggataaggctggtacttgttcaaagactaagccttatagaaaagaggagaa |
15287614 |
T |
|
| Q |
292 |
gaaacttgaaggaatggatgctaagataagaagtattgagatagaggaag |
341 |
Q |
| |
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|| | ||| ||||||||||| | |||| ||||| ||||||||||| |||| |
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| T |
15287613 |
gatagttggaggaatggatggtgagattagaaggattgagatagaagaag |
15287564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 93 - 266
Target Start/End: Original strand, 15262614 - 15262787
Alignment:
| Q |
93 |
ttaattatactgatattggattttatgttccaatgagaaaggctttaaggactacccttaatagcataattgagaagaaaattgtaagagggaatggaat |
192 |
Q |
| |
|
||||||| |||||||| || ||||| |||||| | |||||||||||||||||| |||||| |||||||||||| |||| ||| | | |||||||||| |
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| T |
15262614 |
ttaattacactgatatcggtttttacgttccattaagaaaggctttaaggacttgtcttaatggcataattgagaggaaagttgctaaaaggaatggaat |
15262713 |
T |
|
| Q |
193 |
tgatgtaattgtgagaacatactcacctactcattttgaaggtgattgggataagggtggtacatgttcaaaga |
266 |
Q |
| |
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|| |||||||||| ||| | |||||| |||||||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
15262714 |
tggagtaattgtgaaaactttttcaccttctcattttgatggtgattgggataaggctggaacatgttcaaaga |
15262787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 341
Target Start/End: Complemental strand, 15265631 - 15265418
Alignment:
| Q |
128 |
agaaaggctttaaggactacccttaatagcataattga--gaaga--aaattgtaagagggaatggaattgatgtaattgtgagaacatactcacctact |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||| | ||| |||| |||| |||||||||| | ||||| | || | |
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|
| T |
15265631 |
agaaaggctttaaggactacccttaatagcataattgatagaagaggaaat----aaaggtaatgaaattaatgtaattgttacaacatttacgccacat |
15265536 |
T |
|
| Q |
224 |
cattttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgctaagataagaa |
323 |
Q |
| |
|
||||||||||||| ||||||||||| |||| | ||| |||| | | |||| |||| |||| ||||||||| ||||||||||||||| | |||| |||| |
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|
| T |
15265535 |
cattttgaaggtgcttgggataaggctggtgcttgtccaaaaactaagccttatagaaatggagagaagaaagttgaaggaatggatggtgagatgagaa |
15265436 |
T |
|
| Q |
324 |
gtattgagatagaggaag |
341 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
15265435 |
agattgagatagaagaag |
15265418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 15257141 - 15257069
Alignment:
| Q |
93 |
ttaattatactgatattggattttatgttccaatgagaaaggctttaaggactacccttaatagcataattga |
165 |
Q |
| |
|
||||| ||||||| ||||| ||||||| | | |||||||||||||||| ||||| |||||||| |||||||| |
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|
| T |
15257141 |
ttaatcatactgaaattgggttttatgatgtattgagaaaggctttaagaactactcttaatagtataattga |
15257069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 15257012 - 15256924
Alignment:
| Q |
222 |
ctcattttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggat |
310 |
Q |
| |
|
|||||||||||||||| |||||||| | |||| | ||| |||||| | |||| |||| | | ||||||| ||||||||||||||||| |
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|
| T |
15257012 |
ctcattttgaaggtgaatgggataaagctggtgcttgtccaaagactaagccttatagaagtagggagaaggaacttgaaggaatggat |
15256924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 425
Target Start/End: Complemental strand, 11807435 - 11807040
Alignment:
| Q |
30 |
ttccttcaatttactatgagggtggttcaattatgggttgttttagatgtcatgaatttaaatttaattatactgatattggattttatgttccaatgag |
129 |
Q |
| |
|
|||||||| ||||||||||| || |||| |||| ||||||| || ||||||||| || |||| || |||| ||||||||||||||||||||||||||| |
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|
| T |
11807435 |
ttccttcagtttactatgagaatgattcagttataggttgttctatatgtcatgatttaaaatcgaaatataatgatattggattttatgttccaatgag |
11807336 |
T |
|
| Q |
130 |
aaaggctttaaggactacccttaatagcataattgagaagaaaattgtaagagggaatggaattgatgtaattgtgagaacatactcacctactcatttt |
229 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||||||||| |||||| || | |||||||| ||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
11807335 |
aaaggctttaaggattgcccttaataccataattgagaggaaaatggttaaagggaatgaaattgatgtgattgtgagaacattttcacctactcatttt |
11807236 |
T |
|
| Q |
230 |
gaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgctaagataagaagtattg |
329 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
11807235 |
gaaggttcttgggataagggaggtacttgttcaaagaaaaatccatataaatatgaggagaagaaacttgaaggaatggaagctaagataagaagtatgg |
11807136 |
T |
|
| Q |
330 |
agatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccag |
425 |
Q |
| |
|
||||||||||||||||||||||||| | |||| || ||||| |||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
11807135 |
agatagaggaagctgaaaatgctaaggaaaaatctaaacaagttggattaaatttgaaggtgcttgatataacaaaattggcattgttgagaccag |
11807040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 29 - 425
Target Start/End: Original strand, 51383227 - 51383623
Alignment:
| Q |
29 |
gttccttcaatttactatgagggtggttcaattatgggttgttttagatgtcatgaatttaaatttaattatactgatattggattttatgttccaatga |
128 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |||||||||| ||||||||| |||||||||| ||||| ||||||||| |||||||| | |||| |
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|
| T |
51383227 |
gttccttcaatttactatgagggtgagtctattataggttgttttaaatgtcatgatcttaaatttaactataccgatattggaatttatgttgcgatga |
51383326 |
T |
|
| Q |
129 |
gaaaggctttaaggactacccttaatagcataattgagaagaaaattgtaagagggaatggaattgatgtaattgtgagaacatactcacctactcattt |
228 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| | |||| |||| | ||||||||||| | |||| ||||||||||||| ||||| ||||||| |
|
|
| T |
51383327 |
gaaaggctttaaggactactcttaatagtataattgaaaggaaagttgttaaagggaatggaaattatgtgattgtgagaacattttcaccatctcattt |
51383426 |
T |
|
| Q |
229 |
tgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgctaagataagaagtatt |
328 |
Q |
| |
|
|||||||| |||||||||||| || || ||||||||||||||||||||| | |||| ||||||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
51383427 |
tgaaggtggttgggataagggaggaacttgttcaaagagtgagccatatgaaaatggggagaagaaacttgaagaaatggatgctgagataagaagtatt |
51383526 |
T |
|
| Q |
329 |
gagatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccag |
425 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| ||||| | ||||| |||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
51383527 |
gagatagaggaagtgaaaaatgctaagtcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattgttgagaccag |
51383623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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