View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_19 (Length: 407)
Name: NF6681_2D_low_19
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 31 - 407
Target Start/End: Original strand, 25966271 - 25966647
Alignment:
| Q |
31 |
tttttccattaaaaaactaataatccactaaaattgatatttgattcataatttagaatagatgcataccttaagtcctacacagaatgagtgtaatttt |
130 |
Q |
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| T |
25966271 |
tttttccattaaaaaactaattatcaactaaaattgcttttccaatcaaaattgaaaatagatgcataccttaagccctacacagaatgagtgtaatttt |
25966370 |
T |
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| Q |
131 |
gctccccattgcttagcagcttttgtgccagccaggtatctagcagtgactgctgcaaccaatgaagaatccaaacctccagatagtaaaacaccgaacg |
230 |
Q |
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| T |
25966371 |
gctccccattgtttagcagcttttgtgccagccaggtatctagcagtgactgctgcaaccaatgaagaatccaaacctccagatagtaaaacaccgaacg |
25966470 |
T |
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| Q |
231 |
gcacatcagtcatcaacctttttatcacagcctgtaatcaaacacataaatcgtattaattttacttagtctaactcaaccttacagaaccgacttaaaa |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
25966471 |
gcacatcagtcatcaacctttttatcacagcctgtaatcaaacacataaatcgtattaattttactgagtctaactcaaccttacaaaaccgacttaaaa |
25966570 |
T |
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| Q |
331 |
atgtgagaattgtctaagcgctttataaactcttggtcaatgtgtttgtgagtcttaccttctcaaaggcattcctc |
407 |
Q |
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| T |
25966571 |
atgtgagaattgtctaagcgctttataaactcttggtcaatgtgtttgtgagtcttaccttctcaaaggcattcctc |
25966647 |
T |
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Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 113 - 270
Target Start/End: Original strand, 30273390 - 30273547
Alignment:
| Q |
113 |
cagaatgagtgtaattttgctccccattgcttagcagcttttgtgccagccaggtatctagcagtgactgctgcaaccaatgaagaatccaaacctccag |
212 |
Q |
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| T |
30273390 |
cagaatgagtgtaattttgatccccattgttcagcagctttagtggttgctaggtagcgagaagtgatggatgcaaccaatgatgagtccaaacctccag |
30273489 |
T |
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| Q |
213 |
atagtaaaacaccgaacggcacatcagtcatcaacctttttatcacagcctgtaatca |
270 |
Q |
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| T |
30273490 |
atagtagaacaccaaaaggcacatcagtcatcaacctctttatcactgcctgtaatca |
30273547 |
T |
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