View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6681_2D_low_20 (Length: 396)
Name: NF6681_2D_low_20
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 39458206 - 39458568
Alignment:
| Q |
19 |
ttagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggagatccaccatgccggaagttatattggagtttgggggaagagaacatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39458206 |
ttagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggagatccaccatgccggaagttatattggagtttgggggaagagaacatt |
39458305 |
T |
|
| Q |
119 |
ctggaaggtcgacaatgttaagagaatcgtcgatgggaagggatttagtgtagacatctgtttctgttgtgtgtggaaatttcatgaccaagatagttat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39458306 |
ctggaaggtcgacaatgttaagagaatcgtcgatggcaagggatttagtgtagacatctatttctgttgtgtgtggaaatttcatgaccaagatagttat |
39458405 |
T |
|
| Q |
219 |
tcggagacggttatcactgttgattagaagctttgcaaattcgagggtggaaactagatgaccgacaccaggtgaaggaataatcacccacttctgcttt |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
39458406 |
tcggagacggttatcacggttgattagaagctttgcaaattcgagggtggaaactagatgaccaacaccaggtgaagagataatca-ccacttctgcttt |
39458504 |
T |
|
| Q |
319 |
cttcatcctggatatgcacttactcagtgtgagtgactgtgttctcaattgttctttgatgtcc |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39458505 |
cttcatcctggatatgcacttactcagtgtgagtgactgtgttctcaattgttctttgatgtcc |
39458568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 197 - 380
Target Start/End: Complemental strand, 39480452 - 39480270
Alignment:
| Q |
197 |
atttcatgaccaagatagttattcggagacggttatcactgttgattagaagctttgcaaattcgagggtggaaactagatgaccgacaccaggtgaagg |
296 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
39480452 |
atttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagg |
39480353 |
T |
|
| Q |
297 |
aataatcacccacttctgctttcttcatcctggatatgcacttactcagtgtgagtgactgtgttctcaattgttctttgatgt |
380 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
39480352 |
gataatca-ccacttctgctttcttcatcctggatatgcacttactcagtgtgagtgactgtgttttctattgttctttgatgt |
39480270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 39486721 - 39486405
Alignment:
| Q |
20 |
tagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggagatccaccatgccggaagttatattggagtttgggggaagagaacattc |
119 |
Q |
| |
|
||||||||||||| || |||| ||||||||||||||||||||||| |||||| | |||| | || | | || ||||||||||||||||||||| |
|
|
| T |
39486721 |
tagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaagagaacattc |
39486622 |
T |
|
| Q |
120 |
tggaaggtcgacaatgttaagagaatcgtcgatgggaagggatttagtgtagacatct-----gtt-tctgttgtgtgtggaaatttcatgaccaagata |
213 |
Q |
| |
|
|||||||| || | | ||||||||| |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||||||||||| |
|
|
| T |
39486621 |
tggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcgacatcgtcatctgtggtgtgtgggaatttgatgaccaagatg |
39486522 |
T |
|
| Q |
214 |
gttattcggagacggttatcactgttgattagaagctttgcaaattcgagggtggaaactagatgaccgacaccaggtgaaggaataatcacccacttct |
313 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
39486521 |
gttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatca-ccacttct |
39486423 |
T |
|
| Q |
314 |
gctttcttcatcctggat |
331 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
39486422 |
gctttcttcatcttggat |
39486405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 99 - 330
Target Start/End: Complemental strand, 39472213 - 39471983
Alignment:
| Q |
99 |
gtttgggggaagagaacattctggaaggtcgacaatgttaagagaatcgtcgatgggaagggatttagtgtagacatctgtttctgttgtgtgtggaaat |
198 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||| || |||||| ||| ||||||||||||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
39472213 |
gtttggggcaagagaacattctggaaggttgatgatgtggagtgaatcggagataggaagggatttagtgtagacatcggtttctgtgatgtgtgggaat |
39472114 |
T |
|
| Q |
199 |
ttcatgaccaagatagttattcggagacggttatcactgttgattagaagctttgcaaattcgagggtggaaactagatgaccgacaccaggtgaaggaa |
298 |
Q |
| |
|
|| || || || | ||||||||||||||||||||||| ||||||||||||||| ||||| ||||| | ||||||| |||||| || | || |||| | |
|
|
| T |
39472113 |
ttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaaggga |
39472014 |
T |
|
| Q |
299 |
taatcacccacttctgctttcttcatcctgga |
330 |
Q |
| |
|
|| || |||||||||||||||||||| |||| |
|
|
| T |
39472013 |
caaaca-ccacttctgctttcttcatcttgga |
39471983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 39451259 - 39450952
Alignment:
| Q |
20 |
tagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggagatccaccatgc---cggaagttatattggagtttgggggaagagaaca |
116 |
Q |
| |
|
|||||||||| || ||||||| |||||| |||||||||||||||| ||||||| | |||| || || | ||||| |||||| ||||||||| |
|
|
| T |
39451259 |
tagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaac |
39451160 |
T |
|
| Q |
117 |
ttctggaaggtcgacaatgttaagagaatcgtcgatgggaagggatttagtgtagacatctgtttctgttgtgtgtggaaatttcatgaccaagatagtt |
216 |
Q |
| |
|
||||||||||| || ||||| |||||||| ||| |||||||||||||||| |||||| |||||| | | ||||| ||||| || || || | |||| |
|
|
| T |
39451159 |
ttctggaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatatgtgggaatttgataactaaaacagtt |
39451060 |
T |
|
| Q |
217 |
attcggagacggttatcactgttgattagaagctttgcaaattcgagggtggaaactagatgaccgacaccaggtgaaggaataatcacccacttctgct |
316 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||| | |||||||| |||| |||| || ||||||||||| |
|
|
| T |
39451059 |
actcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaaca-ccacttctgct |
39450961 |
T |
|
| Q |
317 |
ttcttcatc |
325 |
Q |
| |
|
||||||||| |
|
|
| T |
39450960 |
ttcttcatc |
39450952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 324
Target Start/End: Complemental strand, 39454892 - 39454592
Alignment:
| Q |
23 |
tgaggttggagacggcttttttgacgtttggtttctgagctttgaggagatccaccatgccggaagttatattggagtttgggggaagagaacattctgg |
122 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||||| ||| || | |||| |||| | ||| | ||||||||||||||| |||||||| |
|
|
| T |
39454892 |
tgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatggaggaaactggattagtgtttgggggaagagagcattctgg |
39454793 |
T |
|
| Q |
123 |
aaggtcgacaatgttaagagaatcgtcgatgggaagggatttagtgtagacatctgtttctgttgtgtgtggaaatttcatgaccaagatagttattcgg |
222 |
Q |
| |
|
||||| || ||| | |||||| ||| ||||| |||||| |||| ||||| ||||| || | |||||||||||| | ||| || | |||||||||| |
|
|
| T |
39454792 |
aaggttgatgatgcggattgaatcggagattggaagagatttactgtatacatcagtttcagtggcgtgtggaaatttgaggactaaaacagttattcgg |
39454693 |
T |
|
| Q |
223 |
agacggttatcactgttgattagaagctttgcaaattcgagggtggaaactagatgaccgacaccaggtgaaggaataatcacccacttctgctttcttc |
322 |
Q |
| |
|
||||||||||||| |||||||||||| || || || || ||||||||||||| ||| || |||||||| ||||| |||| || ||||||||||||||||| |
|
|
| T |
39454692 |
agacggttatcacggttgattagaagtttcgcgaactcaagggtggaaactaaatggccaacaccaggagaagggataaaca-ccacttctgctttcttc |
39454594 |
T |
|
| Q |
323 |
at |
324 |
Q |
| |
|
|| |
|
|
| T |
39454593 |
at |
39454592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 39475765 - 39475433
Alignment:
| Q |
20 |
tagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggagatccaccatg---ccggaagttatattggagtttgggggaagagaaca |
116 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||||||||||| ||||||| | |||| | || | || || |||||||||||||||| |
|
|
| T |
39475765 |
tagtgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaac |
39475666 |
T |
|
| Q |
117 |
ttctggaaggtcgacaatgttaagagaatcgtcgatgggaagggatttagtgtagacatctgtttctgttgtgtgtggaaatttcatgaccaagatagtt |
216 |
Q |
| |
|
||||||||||| || ||||| ||||| || ||| |||||||||||||||| |||||| |||||||| ||||||| ||||| || || || | |||| |
|
|
| T |
39475665 |
ttctggaaggttgatgatgttgagagattctgagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaacagtt |
39475566 |
T |
|
| Q |
217 |
attcggagacggttatcactgttgattagaagctttgcaaattcgagggtggaaactagatgaccgacaccaggtgaaggaataatcacccacttctgct |
316 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||| |||| || || ||||||| |||||| | | ||| || |||| |||| || ||||||||||| |
|
|
| T |
39475565 |
actcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaaca-ccacttctgct |
39475467 |
T |
|
| Q |
317 |
ttcttcatcctggatatgcacttactcagtgtga |
350 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
39475466 |
ttcttcatcttggatatacacttgatcagtgtga |
39475433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 104 - 324
Target Start/End: Original strand, 39464531 - 39464750
Alignment:
| Q |
104 |
ggggaagagaacattctggaaggtcgacaatgttaagagaatcgtcgatgggaagggatttagtgtagacatctgtttctgttgtgtgtggaaatttcat |
203 |
Q |
| |
|
||||||||||| ||||||||||| || | ||||||||||| ||||||| |||||||||||||||||| | ||||| || ||||| | ||| || |
|
|
| T |
39464531 |
ggggaagagaaacttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgat |
39464630 |
T |
|
| Q |
204 |
gaccaagatagttattcggagacggttatcactgttgattagaagctttgcaaattcgagggtggaaactagatgaccgacaccaggtgaaggaataatc |
303 |
Q |
| |
|
||| ||||| |||||||||||||||||||||| ||||||||||||||| ||||| || |||| |||||||||||||| ||| | || |||| |||| | |
|
|
| T |
39464631 |
gactaagatggttattcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaagggataaac |
39464730 |
T |
|
| Q |
304 |
acccacttctgctttcttcat |
324 |
Q |
| |
|
| | ||||||||||||||||| |
|
|
| T |
39464731 |
a-ctacttctgctttcttcat |
39464750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 39460506 - 39460248
Alignment:
| Q |
20 |
tagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggagatccaccatgccggaagttatattggagtttgggggaagagaacattc |
119 |
Q |
| |
|
||||||| || || ||||||| ||||||||||| ||||||||||| ||||| | ||| ||| | ||||||| | | |||||||||||||||| ||| |
|
|
| T |
39460506 |
tagtgagattagatacggcttgtttgacgtttgatttctgagcttcgaggaaagccatcattctggaagttggttcgatgtttgggggaagagaaacttc |
39460407 |
T |
|
| Q |
120 |
tggaaggtcgacaatgttaagagaatcgtcgatgggaagggatttagtgtagacatctgtttctgttgtgtgtggaaatttcatgaccaagatagttatt |
219 |
Q |
| |
|
|||||||| || |||| |||||||| ||||||| |||||||||| ||||| | ||||| ||||| ||| | ||||||||| | || ||| ||| |
|
|
| T |
39460406 |
tggaaggttgatgatgtcgagagaatcagaagtgggaagtgatttagtgttaacatcggattctgatgtgtatgggagtttcatgactaggacagtaatt |
39460307 |
T |
|
| Q |
220 |
cggagacggttatcactgttgattagaagctttgcaaattcgagggtggaaactagatg |
278 |
Q |
| |
|
||||| || ||||||| |||| ||||||||||||| || || ||||||||| ||||||| |
|
|
| T |
39460306 |
cggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaatctagatg |
39460248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 39470800 - 39470931
Alignment:
| Q |
150 |
gatgggaagggatttagtgtagacatctgtttctgttgtgtgtggaaatttcatgaccaagatagttattcggagacggttatcactgttgattagaagc |
249 |
Q |
| |
|
|||||||| |||||||| ||||||||| | ||||| |||||||| ||||||||||| |||| |||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
39470800 |
gatgggaatggatttagcgtagacatcagattctgcagtgtgtgggaatttcatgactaagacagttattcagaggcggttatcatggttgattagaagc |
39470899 |
T |
|
| Q |
250 |
tttgcaaattcgagggtggaaactagatgacc |
281 |
Q |
| |
|
|| || || || | || |||||||||||||| |
|
|
| T |
39470900 |
ttggcgaactctaaggcagaaactagatgacc |
39470931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 327
Target Start/End: Original strand, 43312598 - 43312732
Alignment:
| Q |
192 |
tggaaatttcatgaccaagatagttattcggagacggttatcactgttgattagaagctttgcaaattcgagggtggaaactagatgaccgacaccaggt |
291 |
Q |
| |
|
|||||| || |||||||||| |||| |||||||||||||||| |||||| |||||||| ||||| || |||||||| |||| ||| || ||||| || |
|
|
| T |
43312598 |
tggaaacttgatgaccaagacggttacacggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctgga |
43312697 |
T |
|
| Q |
292 |
gaaggaataatcacccacttctgctttcttcatcct |
327 |
Q |
| |
|
||||| |||| || |||||||| |||||||||||| |
|
|
| T |
43312698 |
gaagggataaaca-ccacttctagtttcttcatcct |
43312732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 39483516 - 39483339
Alignment:
| Q |
20 |
tagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggagatccaccatgccggaagttatattggagtttgggggaagagaacattc |
119 |
Q |
| |
|
|||||||||||||||| |||| | | | ||||||||||||||||| |||||| | ||| | ||| || || | |||||||||||||| ||||||| |
|
|
| T |
39483516 |
tagtgaggttggagacagcttgtattatgtttggtttctgagcttcaaggagagcgttgatggcagaaactagatcgaagtttgggggaagataacattc |
39483417 |
T |
|
| Q |
120 |
tggaaggtcgacaatgttaagagaatcgtcgatgggaagggatttagtgtagacatctgtttctgttgtgtgtggaaa |
197 |
Q |
| |
|
|||||||| || | |||||| |||| ||||||||||||||||| |||||||| |||| |||||||| |||||| |
|
|
| T |
39483416 |
tggaaggttgattacattaagaaaatcaaagatgggaagggatttagggtagacattggtttatgttgtgtatggaaa |
39483339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 39470670 - 39470722
Alignment:
| Q |
20 |
tagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggaga |
72 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| ||| ||||||| ||||||| |
|
|
| T |
39470670 |
tagtgaggttggagatagcttgtttgacgtttgctttatgagcttcgaggaga |
39470722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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