View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_28 (Length: 338)
Name: NF6681_2D_low_28
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 46267171 - 46267399
Alignment:
| Q |
1 |
gtcatttgtgcatgtcaaccttaaaaaacaaaccaccgtgatggagggaaaataaacacaacactaggtccaacgaatgaacaagctagtgtctttttta |
100 |
Q |
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| T |
46267171 |
gtcatttgtgcatgtcaaccttaaaaaacaaaccaccgtgatggagggaaaataaacacaacactaggtccaacgaatgaacaagctagtgtcttt---- |
46267266 |
T |
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| Q |
101 |
gtcttttcatttaataactttgtctaacaaactaaattctatgtccttnnnnnnnnnnnnnnnctaaattatatgtcttaagatggaacaagtgtttact |
200 |
Q |
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| T |
46267267 |
---------tttaataactttgtctaacaaactaaattctatgtcctt---aaaaaaaaaaaactaaattatatgtcttaagatggaacaagtgtttact |
46267354 |
T |
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| Q |
201 |
ttgcttattacaacctttgatctcttgttcactctaattcttttt |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46267355 |
ttgcttattacaacctttgatctcttgttcactctaattcttttt |
46267399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 46266958 - 46266867
Alignment:
| Q |
237 |
attctttttcttcaccaggtatataccactattcatattcatataagaatgattatgtttttcccatttacgtatatgtttttattgatgtc |
328 |
Q |
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| T |
46266958 |
attcttttacttcaccaggtatataccactattcatattcatataagaatgattatgtttttcccatttacgtatatgtttttattgatgtc |
46266867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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