View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_3 (Length: 674)
Name: NF6681_2D_low_3
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 495
Target Start/End: Original strand, 45896518 - 45897011
Alignment:
| Q |
11 |
agtttggtgttacaaatactaatgtttaagggtgatgtgattacttggctttgccaaatgagttgggtagttttctccagctacaattaccagaatgtta |
110 |
Q |
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| T |
45896518 |
agtttggtgttacaaatactaatgtttaagggtgatgtgattacttggctttgccaaatgagttgggtggttttctccagctacaattaccagaatgtta |
45896617 |
T |
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| Q |
111 |
ggttcaagatcaacttcggtgattgtttccccccgggacttgtttgaatcaatacttgtcattggcgagtgatctatttcaggcctaagacaccgcgaac |
210 |
Q |
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| T |
45896618 |
ggttcaagatcaacttcggtgattgtttccccccgggacttgtttgaatcaatacttgtcatcggcgagtgatctatttcaggcctaagacaccgcgaac |
45896717 |
T |
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| Q |
211 |
aagctaccgtcagcaacgctactccaataattataaaaatgggtgcaaggccaccgtagagaaatgccactgaggagtcccaactccatttaaatgatcc |
310 |
Q |
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| T |
45896718 |
aagctaccgtcagcaacgctactccaataattataaaaatgggtgcaaggccaccgtagagaaatgccgctgaggagttccaactccatttaaatgatcc |
45896817 |
T |
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| Q |
311 |
atgattaactgttgactgattcatatctataaatattagtttagatatatgcat------atatatttcactcagctaagctacataggtagg---gnnn |
401 |
Q |
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| T |
45896818 |
atgattaactgttgactgattcatatctataaatattagtttagatatatgcatacatacagatatttcactcagctaagctacataggtaggttttttt |
45896917 |
T |
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| Q |
402 |
nnnnnnnagtaattggtagagtttgattgcattcttataggtagttatgtaccttgtgagtatttgtttaattttaagaaacaggattcaaaga |
495 |
Q |
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| T |
45896918 |
ttttgttagtaattggtagagtttgattgcattcttataggtagttatgtaccttgtgagtatttgtttaattttaagaaacaggattcaaaga |
45897011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 573 - 656
Target Start/End: Original strand, 45897088 - 45897171
Alignment:
| Q |
573 |
gttccgacaaacttctgaaacgactttgtcaaaatttagaagtaaagaaaaaacaattcgtgtaaaaagaatacattgatatat |
656 |
Q |
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| T |
45897088 |
gttccgacaaacttctgaaacgacattgtcaaaatttagaagtaaagaaaaaacaattcgtgtaaaaagaatacattgatatat |
45897171 |
T |
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