View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_30 (Length: 327)
Name: NF6681_2D_low_30
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_30 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: scaffold0856 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 4593 - 4293
Alignment:
| Q |
19 |
aggaaggaggtagtagaatcatcaggaaaattacaatgaagagggac-tagagagaggtagccatagggaggaggtagaatcttaattagaaatatgtcc |
117 |
Q |
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| T |
4593 |
aggaaggaggtagtagaatcatcaggaaaattacaatgaagagggacctagagagaggtagccatagggaggaggtagaatcttaattagaaatatgtcc |
4494 |
T |
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| Q |
118 |
tagcctacaatggatgcagattgacaaagaatcggttcggcagtgggttgagttgaaacatgatttgtatttgatgatcatgaatccaagtgtagatgaa |
217 |
Q |
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| T |
4493 |
tagcctacaatggatgcagattgacaaagaaccggttcggcagtgggttgagttgaaacatgatttgtatttgatgatcatgaatccaagtgtagatgaa |
4394 |
T |
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| Q |
218 |
ttgtatacttaacctactacctggtcagttatctctttcaccatccgacaattgagtcaacatgtctccaaacctcaaccaacaagttcattcactacca |
317 |
Q |
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| T |
4393 |
ttgtatacttaacctactacctggtcagttatctctttcaccatccgacaattgagtcaacatgtctccaaacctcaaccaacaagttcattcactacca |
4294 |
T |
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| Q |
318 |
g |
318 |
Q |
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| T |
4293 |
g |
4293 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 30272888 - 30272962
Alignment:
| Q |
19 |
aggaaggaggtagtagaatcatcaggaaaattacaatgaagagggac-tagaga--gaggtagccatagggagga |
90 |
Q |
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| T |
30272888 |
aggaaggaggtagaagaatcatcaggaagattacaatgaagaaggacatagagagggagagagccatagggagga |
30272962 |
T |
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