View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_34 (Length: 323)
Name: NF6681_2D_low_34
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 35071937 - 35071611
Alignment:
| Q |
1 |
aggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgaga |
100 |
Q |
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| T |
35071937 |
aggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgaga |
35071838 |
T |
|
| Q |
101 |
gtaattatgaaaagtt---------------gaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgt |
185 |
Q |
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| T |
35071837 |
gtaataatgaacagttctgttcgtgtggattgaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgt |
35071738 |
T |
|
| Q |
186 |
tacaaataagaaacgtgtgtgtatcataagcattaatacgggttagataaagcacctacgtgttgatgtccaccacacatgtgattctacggaattatgt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071737 |
tacaaataagaaacgtgtgtgtatcataagcattaatacgagttagataaagcacctacgtgttgatgtccaccacacatgtgattctacggaattatgt |
35071638 |
T |
|
| Q |
286 |
tatttttcaattattattgatgtccat |
312 |
Q |
| |
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|||||||||||||||||| |||||||| |
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| T |
35071637 |
tatttttcaattattattaatgtccat |
35071611 |
T |
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