View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6681_2D_low_37 (Length: 318)

Name: NF6681_2D_low_37
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6681_2D_low_37
NF6681_2D_low_37
[»] chr3 (1 HSPs)
chr3 (25-315)||(28609701-28609991)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 25 - 315
Target Start/End: Complemental strand, 28609991 - 28609701
Alignment:
Q  25 caaatttcaagcacttgaacaagttctcaatgaccttgaagcttcattggagaaaggcatcaaaattgaccctgaaatttatgcttctttgttagaaact 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28609991 caaatttcaagcacttgaacaagttctcaatgaccttgaagcttcattggagaaaggcatcaaaattgaccctgaaatttatgcttctttgttagaaact 28609892  T
Q  125 tgttaccgtttcggagctattcatcatggtatccggcttcaccgtcttatcccaccagcccttttgcatagaaatgttggaataagttctaaacttgtta 224  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28609891 tgttaccgtttcggagctattcatcacggtatctggcttcaccgtcttatcccaccagcccttttgcatagaaatgttggaataagttctaaacttgtta 28609792  T
Q  225 ggttgtatgcttcatttgggtatatggatgatgcacatgacttgtttgatcaaatgactaagagggatatgtatgcgtttccgtggaattc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28609791 ggttgtatgcttcatttgggtatatggatgatgcacatgacttgtttgatcaaatgactaagagggatatgtatgcgtttccgtggaattc 28609701  T

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