View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_41 (Length: 308)
Name: NF6681_2D_low_41
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 54221269 - 54221561
Alignment:
| Q |
1 |
ttgtacatttcactttttactcattgttgattagatataggttatggacaataatatgtaggaaaaatattgttctcttcaacgaaaatgacaaacctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54221269 |
ttgtacatttcactttttactcattgttgattagatataggttatggacaataatatgtaggaaaaatattgttctcttcaacgaaaatgacaaacctac |
54221368 |
T |
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| Q |
101 |
accatgcggttcttgaactttgtttatgttgttacagcctggagctacatttgaactaaatattgaacttttgcaattggcatctacatgaagagttgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54221369 |
accatgcggttcttgaactttgtttatgttgttacagcctggagctacatttgaactaaatattgaacttttgcaattggcatctacatgaagagatgag |
54221468 |
T |
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| Q |
201 |
cttgagttgattcttatgaagagcttgataatttaacttaagaatttgtaccctatgaggcttgggctatggctattcttttcccattgatgt |
293 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54221469 |
tttgagttgattcttatgaagagctggataatttaacttaagaatttgtaccctatgaggcttgggctatggctattcttttcccattgatgt |
54221561 |
T |
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