View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_45 (Length: 303)
Name: NF6681_2D_low_45
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 32325742 - 32325919
Alignment:
| Q |
17 |
atataatacctattgacagtagtatatctcaactccttgagaggttgccgagacatcaaagaatccnnnnnnn----ttatgtannnnnnnncacgtcat |
112 |
Q |
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|||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| ||| | ||||||| |||||||| |
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| T |
32325742 |
atataataccgattgacagcagtatatctcgactccttgagaggttgccgagacatcaaataatacaaaaaaaaatattatgtattttttttcacgtcat |
32325841 |
T |
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| Q |
113 |
taaagttaaaacgacgtgaaaagcaaaatactttaggtttaaaagagtgaaatgaaaaattgaagtgataatctctgc |
190 |
Q |
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| T |
32325842 |
taaagttaaaacgacgtgaaaagcaaaatactttaggtttaaaagagtgaaatgaaaaattgaagtgataatctctgc |
32325919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 188 - 296
Target Start/End: Complemental strand, 32326051 - 32325943
Alignment:
| Q |
188 |
tgccattcctcagggcattagttatgccaaacttgctgatcttcctcctctcattggcctttgtaagtcattcttatcattacattacatgcattcttaa |
287 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
32326051 |
tgccattcctcaaggcattagttatgccaaacttgctaatcttcctcctctcattggcctttgtaagtcattcttattattacattacattcattcttaa |
32325952 |
T |
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| Q |
288 |
ttacttcgg |
296 |
Q |
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||||||||| |
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| T |
32325951 |
ttacttcgg |
32325943 |
T |
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