View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_5 (Length: 580)
Name: NF6681_2D_low_5
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Original strand, 27548676 - 27549225
Alignment:
| Q |
18 |
ggaagtattgaagcttatgtgatgtattcgtaggaaaatataaagaagtgagatgcatgttagaacagggtttatgttggaggaatttctgcataccacc |
117 |
Q |
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| T |
27548676 |
ggaagtgttgaagcttatgtgatgtattcgtaggaaaatataaagaagtgagatgcatgttagaacagggtttatcttggaggaatttctgcataccacc |
27548775 |
T |
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| Q |
118 |
atgtatagatttgttttccttttctgactgattgcattttcacactgaatactttgtagggaaaagatcgatacccatatccagttggctaccaagctgt |
217 |
Q |
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| T |
27548776 |
gtgtatagatttgttttccttttctgactgattgcatttttgtactgaatactttgtagggaaaagatcgatacccatatccagttggctaccaggctgt |
27548875 |
T |
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| Q |
218 |
tagagctcataatggtactacttataagatggaaatacttgaaggcgacaatggtcctgaatttttggtttgtattcatgattctttgtgcttttatgtt |
317 |
Q |
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| T |
27548876 |
tagagctcataatggtactacttataagatggaaatacttgaaggcgataatgggcctaaatttttggtttgtattcatgattctttgtgctttaatgtt |
27548975 |
T |
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| Q |
318 |
ttgagttattccatattctaaatgtttcaacttgctttgagttttgtaacaatttaagttacttactgtttctacagatttcttctgatgatgggaattc |
417 |
Q |
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| T |
27548976 |
ttgagttattccatattataaatgtttcagcttgctttgaattttgtaacaatttaagttacttactgtttctacagatttcttctgatgatggaaattc |
27549075 |
T |
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| Q |
418 |
agcttctgggaaaactccagactctgcgtgggtggaatttcagaagaaaggttacaaccgcgtgaagatttggcatgggaagagactttcatctaagatg |
517 |
Q |
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|||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27549076 |
agctactggaaaaactccagactctgcgtgggaggaatttcagaagaaaggttacaaccgcatgaagatttggcatgggaagagactttcatctaagatg |
27549175 |
T |
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| Q |
518 |
tatggcttggaggtagaaatcagtgacattgataattctgtttttgatgt |
567 |
Q |
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| T |
27549176 |
tatggcttggaggtagaaatcagtgacattgataattctatttttaatgt |
27549225 |
T |
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