View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_50 (Length: 291)
Name: NF6681_2D_low_50
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 517357 - 517611
Alignment:
| Q |
16 |
tggtgttgctggacaatactacaaggacatggatttctccaaagtaattaattgtcnnnnnnntcctgtaataagtgatttgcctccagaaaaatataat |
115 |
Q |
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| T |
517357 |
tggtgttgctggacaatactacaaggacatggatttctccaaagtaattaattgtcaaaaaaatcctgtaataagtgatttgcctccagaaaaatataat |
517456 |
T |
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| Q |
116 |
gacactgaaattggtaaaataccattttgttgtagaaatggaactcttttaccaatacttatggatccaagccaatccaagtcaatttttcaaatgcaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
517457 |
gacactgaaattggtaaaataccattttgttgtagaaatggaactcttttaccaatacttatggatccaagccaatccaagtcaatttttcaaatgcaag |
517556 |
T |
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| Q |
216 |
tttttaaatgtccacctgatttggataaaaaatctattttcccaccagcaagatg |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
517557 |
tttttaaatgtccacctgatttggataaaaaatctattttcccaccagcaagatg |
517611 |
T |
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