View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_65 (Length: 241)
Name: NF6681_2D_low_65
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 37702061 - 37702281
Alignment:
| Q |
18 |
aaaacaagccggcataactttgaaaggcttaacaaaagtaagcttaacaagctgcttcatcttctctggagtctgaggaatcaaaatcatagcagcttca |
117 |
Q |
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| T |
37702061 |
aaaacaagccggcataactttgaaaggcttaacaaaagtaagcttaacaagctgcttcatcttctctggagtctgaggaatcaaaatcatagcagcttca |
37702160 |
T |
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| Q |
118 |
tcaatattcttaaccacaaacaatccattctccatatccttatcttccaaacaaaccccagcacnnnnnnncgcaactttatccactctctccgccaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
37702161 |
tcaatattcttaaccacaaacaatccattctccatatccttatcttccaaacaaaccccagcacaacaaaacgcaactttctccactctctccgccaaca |
37702260 |
T |
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| Q |
218 |
aaaccaccataactaacacca |
238 |
Q |
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||||||||||||||||||||| |
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| T |
37702261 |
aaaccaccataactaacacca |
37702281 |
T |
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