View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_69 (Length: 232)
Name: NF6681_2D_low_69
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_69 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 3208815 - 3208957
Alignment:
| Q |
93 |
aacaaacccagaaaaattcaaacttcttcatcaatcatcatcttcaccaacattgataaaact-nnnnnnnnnnttcctaaaaaatgagat--aataaaa |
189 |
Q |
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| T |
3208815 |
aacaaatccagaaaaattcaaacttcttcatcaatcatcatcttcaccaacattaataaaactcagaattttttttcctaaaaaatgagataaaaaaaaa |
3208914 |
T |
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| Q |
190 |
cccaataagaacatgaacaacatcactcacatcaacaaccaca |
232 |
Q |
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| T |
3208915 |
cccaataagaacatgaacaacatcactcacatcaacaaccaca |
3208957 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 36170067 - 36170025
Alignment:
| Q |
186 |
aaaacccaataagaacatgaacaacatcactcacatcaacaac |
228 |
Q |
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| T |
36170067 |
aaaacccaacaagaacatgaacaacatcactcacatcaacaac |
36170025 |
T |
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Target: scaffold0034 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 232
Target Start/End: Original strand, 108755 - 108786
Alignment:
| Q |
201 |
catgaacaacatcactcacatcaacaaccaca |
232 |
Q |
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| T |
108755 |
catgaacaacatcactcacatcaacaaccaca |
108786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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