View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6681_2D_low_76 (Length: 221)
Name: NF6681_2D_low_76
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_76 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 43388595 - 43388780
Alignment:
| Q |
19 |
attgcatcacaacaagtgacctcatgtctcctatatggttagtgcatttaaaagaatcatttacaatgtgcaataattaatatacttaattaagaaagaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43388595 |
attgcatcacaacaagtgacctcatgtctcctatatggttagtgcatttaaaagaatcatttacaatgtgcaataattaatatacttaattaagaaagaa |
43388694 |
T |
|
| Q |
119 |
atactctttgtgttttctgaatctcccaccaccaagtagattgctgaatttcggcttgaatcgtacttgcagcaaccaaatttggat |
205 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43388695 |
atacactttgtgttttctgaatct-ccaccaccaagtagattgctgaatttcggcttgaatcgtacttgcagcaaccaaatttggat |
43388780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University