View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_77 (Length: 219)
Name: NF6681_2D_low_77
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 37090761 - 37090869
Alignment:
| Q |
1 |
ccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37090761 |
ccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcact |
37090860 |
T |
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| Q |
101 |
gcacttccc |
109 |
Q |
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||||||||| |
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| T |
37090861 |
gcacttccc |
37090869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 37097128 - 37097236
Alignment:
| Q |
1 |
ccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37097128 |
ccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcact |
37097227 |
T |
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| Q |
101 |
gcacttccc |
109 |
Q |
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||||||||| |
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| T |
37097228 |
gcacttccc |
37097236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 23187339 - 23187434
Alignment:
| Q |
1 |
ccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctccatcctcttccattaacacgactgcaccttgaaccttccat |
96 |
Q |
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||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
23187339 |
ccctaaatgatgctcacaaagagaataaccaactagggtttgttgacaacacctccatcctcttccattaactcgactgcaccgcgaaccttccat |
23187434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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