View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_84 (Length: 211)
Name: NF6681_2D_low_84
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_84 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 6480227 - 6480033
Alignment:
| Q |
1 |
cggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtt |
100 |
Q |
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| T |
6480227 |
cggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtt |
6480128 |
T |
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| Q |
101 |
tatttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgttagggagaacataatcgattgtgctgatg |
195 |
Q |
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| T |
6480127 |
tatttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtggtttttgttagggagagcgtaatcgattgtggtgatg |
6480033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 6489328 - 6489519
Alignment:
| Q |
1 |
cggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtt |
100 |
Q |
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| T |
6489328 |
cggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtc |
6489427 |
T |
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| Q |
101 |
tatttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgttagggagaacataatcgattgtgctgatg |
195 |
Q |
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| T |
6489428 |
tatttgtgatcattgtgtgaatgatgtctgagtgaaagaagacatcgtac---ttgtgagttttgttagggagagcataaccgattgtggtgatg |
6489519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 51946962 - 51946769
Alignment:
| Q |
2 |
ggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggttt |
101 |
Q |
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| T |
51946962 |
ggttgatgaagagacactcaacatctaagccgacaaggaagctattgttgttttcgtatggtttgatgcttgagagccatttgtccaccatgaaaggttt |
51946863 |
T |
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| Q |
102 |
atttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgttagggagaacataatcgattgtgctgatg |
195 |
Q |
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| T |
51946862 |
atttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtgcttgttgtgagttttattagggacagcgtaatcgattgtggtgatg |
51946769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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