View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_2D_low_9 (Length: 487)
Name: NF6681_2D_low_9
Description: NF6681_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_2D_low_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 216 - 487
Target Start/End: Original strand, 41786026 - 41786297
Alignment:
| Q |
216 |
gatgaggatttggatagccttggggagaagaagagggaagcaataagacagctttgtttggttgttgagtttcatcgcgaccggtgtaactatctaatga |
315 |
Q |
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| T |
41786026 |
gatgaggatttggatagccttggggagaagaagagggaagcaataagacagctttgtttggttgttgagtttcatcgcgaccggtgtaactatctaatga |
41786125 |
T |
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| Q |
316 |
atttggtcgcaagtatgagagttaataagaagacatgaactttcttttttctgcttattattgtacatggagatggagtcattggaaaccaatactccta |
415 |
Q |
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| T |
41786126 |
atttggtcacaagtatgagagttaataagaagacatgaactttcttttttctgcttattattgtacatggagatggagtcattggaaaccaatactccta |
41786225 |
T |
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| Q |
416 |
agttttgtaaaattgaaaaatgattcattctattattgtttttcttactttacccctttcaatttttgattt |
487 |
Q |
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| T |
41786226 |
agttttgtaaaattgaaaaatgattcattctattattgtttttcttactttacccctttcaatttttgattt |
41786297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 41785822 - 41785983
Alignment:
| Q |
12 |
gaaatgaaacaattgaaggaaaatgtggattgtcttacaacgctactgagcgaaaaagaagagcaggaattgttgttaagagacaaagtatggaatttag |
111 |
Q |
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| T |
41785822 |
gaaatgaaacaattgaaggaaaatgtggattgtcttacaacgctactgagcgaaaaagaagagcaggaattgttgttaagagacaaagtatggaatttag |
41785921 |
T |
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| Q |
112 |
aagccacagtgagcaaagaaggaggagagaaattgaacttgacaaatgcagtgagccagctt |
173 |
Q |
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| T |
41785922 |
aagccacagtgagcaaagaaggaggagagaaattgaacttgacaaatgcagtgagccagctt |
41785983 |
T |
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