View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_low_1 (Length: 413)
Name: NF6681_low_1
Description: NF6681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 20876322 - 20876689
Alignment:
| Q |
1 |
ctccccaaaaagggtgaattatatatgcgataatttgttgtgaaatagtatataaatccctcttataattttgtctatcccatatattttggcttaattt |
100 |
Q |
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| T |
20876322 |
ctccccaaaaagggtgaattatatatgcgataatttgttgtgaaatagtatataaatcc-tcttataattttgtctatcccatatattttggcttaattt |
20876420 |
T |
|
| Q |
101 |
gaatgttatttatttcttctcctcaatgtatatatctaacttattaaggaagaaaagctcgtcgataaggaacacnnnnnnnntatctattttaaaacta |
200 |
Q |
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| T |
20876421 |
gaatgttatttatttcttctcctcaatgtatatatctaacttattaaggaagaaaagctcgtcgataaggaacacaaaaaaaatatctattttaaaacta |
20876520 |
T |
|
| Q |
201 |
tcaacacaattaaaataacatatttcttgtattttacaagacattcgtggatatccttgaacatgaactccaacaggaaaaggatgatagggaaaaatca |
300 |
Q |
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| T |
20876521 |
tcaacacaattaaaataacatatttcttgtattttacaagacattcgtggatatccttgaacatgaactccaacaggaaaaggatgatagggaaaaatca |
20876620 |
T |
|
| Q |
301 |
atgagatatataaaaaatggttgaataatatcttgtcaagtattttggctgaattggtgtaaatagttt |
369 |
Q |
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| T |
20876621 |
atgagatatataaaaaatggttgaataatatcttgtcaagtattttggctgaattggtgtaaatagttt |
20876689 |
T |
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