View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6681_low_2 (Length: 359)

Name: NF6681_low_2
Description: NF6681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6681_low_2
NF6681_low_2
[»] chr7 (2 HSPs)
chr7 (16-340)||(44150838-44151162)
chr7 (209-339)||(40749347-40749477)
[»] chr8 (2 HSPs)
chr8 (26-319)||(33186509-33186802)
chr8 (192-339)||(5788762-5788909)
[»] chr1 (8 HSPs)
chr1 (18-318)||(36989106-36989406)
chr1 (242-315)||(50788882-50788955)
chr1 (215-337)||(31644099-31644221)
chr1 (248-340)||(12804549-12804641)
chr1 (248-338)||(12774933-12775023)
chr1 (24-66)||(31644373-31644415)
chr1 (209-318)||(4160334-4160443)
chr1 (251-312)||(42287116-42287177)
[»] chr2 (4 HSPs)
chr2 (20-319)||(42898066-42898365)
chr2 (48-131)||(40040582-40040665)
chr2 (251-318)||(40040788-40040855)
chr2 (245-339)||(38895896-38895990)
[»] chr4 (2 HSPs)
chr4 (248-339)||(30518187-30518278)
chr4 (245-318)||(22085566-22085639)


Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 44151162 - 44150838
Alignment:
Q  16 attaatggcaacaaatagatttgtgtgtgagatatgtaacaagggttttcagagggaccagaatcttcagttacaccgaagaggtcacaatcttccatgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44151162 attaatggcaacaaatagatttgtgtgtgagatatgtaacaagggttttcagagggaccagaatcttcagttacaccgaagaggtcacaatcttccatgg 44151063  T
Q  116 aaacttaggcaaagaacaagtgcagaggtgaagaaaaaggtgtatgtgtgccctgagccatcatgcgttcaccataatccatctcgagcattaggtgacc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44151062 aaacttaggcaaagaacaagtgcagaggtgaagaaaaaggtgtatgtgtgccctgagccatcatgcgttcaccataatccatctcgagcattaggtgacc 44150963  T
Q  216 ttactggaatcaaaaaacattttagccgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44150962 ttactggaatcaaaaaacattttagccgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggc 44150863  T
Q  316 tcaccagaaaacttgtggtactagg 340  Q
    |||||||||||||||||||||||||    
T  44150862 tcaccagaaaacttgtggtactagg 44150838  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 209 - 339
Target Start/End: Original strand, 40749347 - 40749477
Alignment:
Q  209 ggtgaccttactggaatcaaaaaacattttagccgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagatt 308  Q
    |||||||| || ||||| || |||||||||||  | |||||||| |||||||||||||| ||||| ||||| || || | |||||| || ||||| ||||    
T  40749347 ggtgacctcaccggaataaagaaacattttagtagaaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgatt 40749446  T
Q  309 ggaaggctcaccagaaaacttgtggtactag 339  Q
    |||| ||||||   |||||||||||||||||    
T  40749447 ggaaagctcacactaaaacttgtggtactag 40749477  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 319
Target Start/End: Original strand, 33186509 - 33186802
Alignment:
Q  26 acaaatagatttgtgtgtgagatatgtaacaagggttttcagagggaccagaatcttcagttacaccgaagaggtcacaatcttccatggaaacttaggc 125  Q
    ||||| |||||||||||||| ||||||||||| || ||||| || || |||||||||||  ||||  ||||||| || ||||| ||||||||||| || |    
T  33186509 acaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaactgagac 33186608  T
Q  126 aaagaacaagtgcagaggtgaagaaaaaggtgtatgtgtgccctgagccatcatgcgttcaccataatccatctcgagcattaggtgaccttactggaat 225  Q
    ||||| |||||  |||  | | ||||| ||| ||||| || ||||| ||  | || ||||| ||| |||| ||| |||| ||||||||  | ||||| ||    
T  33186609 aaagatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggat 33186708  T
Q  226 caaaaaacattttagccgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcac 319  Q
     ||||| || ||| |  | |||||||||||||| || ||||||||||| || || ||||| | ||||||||||||||| |||||||| ||||||    
T  33186709 aaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcac 33186802  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 5788909 - 5788762
Alignment:
Q  192 atccatctcgagcattaggtgaccttactggaatcaaaaaacattttagccgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagata 291  Q
    |||||||  |||||||||| ||  | ||||||||||| ||||| |||  | | || |||||||||||||| ||||||||||| ||||| || || | |||    
T  5788909 atccatcaagagcattaggggatttgactggaatcaagaaacacttttccagaaagcatggtgagaagaagtggaaatgtgaaaagtgttcaaagaaata 5788810  T
Q  292 tgctgttcaatcagattggaaggctcaccagaaaacttgtggtactag 339  Q
    |||||||||||| |||||||| |||||    ||||||||||| |||||    
T  5788809 tgctgttcaatctgattggaaagctcattccaaaacttgtggcactag 5788762  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 36989106 - 36989406
Alignment:
Q  18 taatggcaacaaatagatttgtgtgtgagatatgtaacaagggttttcagagggaccagaatcttcagttacaccgaagaggtcacaatcttccatggaa 117  Q
    ||||||| ||||| ||||| || ||||| |||||||||||||||||||| || ||||| ||||||||  | ||||||||||| |||||  | || |||||    
T  36989106 taatggctacaaacagattcgtatgtgaaatatgtaacaagggttttcaaagagaccaaaatcttcaactgcaccgaagaggacacaacttgccttggaa 36989205  T
Q  118 acttaggcaaagaacaagtgcagaggtgaagaaaaaggtgtatgtgtgccctgagccatcatgcgttcaccataatccatctcgagcattaggtgacctt 217  Q
     || |  |||||||| ||||||||  | |  || | ||| ||||| || ||||| || ||||| || |||||||| ||  |  ||||| | ||||| |||    
T  36989206 gctaaaacaaagaactagtgcagaaattagaaagagggtttatgtttgtcctgaaccttcatgtgtacaccataaccctgcaagagcacttggtgatctt 36989305  T
Q  218 actggaatcaaaaaacattttagccgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctc 317  Q
    |||||||| ||||| || ||| |  | || ||||||||||| || ||||||||||| ||||| ||||| | ||||||||||||||| |||||||| ||||    
T  36989306 actggaattaaaaagcacttttgtagaaagcatggtgagaaaaagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctc 36989405  T
Q  318 a 318  Q
    |    
T  36989406 a 36989406  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 50788955 - 50788882
Alignment:
Q  242 cgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggc 315  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| |  |||||||||||||| |||||||||||    
T  50788955 cgcaaacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggc 50788882  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 337
Target Start/End: Complemental strand, 31644221 - 31644099
Alignment:
Q  215 cttactggaatcaaaaaacattttagccgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaagg 314  Q
    ||||| ||||| || ||||||| |||  | |||||||||||||| |||||||||||||| |||||||| || |  ||||||||||| || |||||||| |    
T  31644221 cttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaag 31644122  T
Q  315 ctcaccagaaaacttgtggtact 337  Q
    |||||   ||||| |||||||||    
T  31644121 ctcactctaaaacctgtggtact 31644099  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 340
Target Start/End: Complemental strand, 12804641 - 12804549
Alignment:
Q  248 catggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagg 340  Q
    ||||||||||| || ||||||||||| ||||| ||||| | ||||||||||||||| |||||||| |||||    || |||||||||||||||    
T  12804641 catggtgagaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagg 12804549  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 338
Target Start/End: Original strand, 12774933 - 12775023
Alignment:
Q  248 catggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtacta 338  Q
    ||||||||||| |||||||| ||||| ||||| ||||| |  |||||||||||||| |||||||| |||||    ||||||||||||||||    
T  12774933 catggtgagaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtacta 12775023  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 31644415 - 31644373
Alignment:
Q  24 caacaaatagatttgtgtgtgagatatgtaacaagggttttca 66  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  31644415 caacaaatagatttgtgtgtgagatctgcaacaagggttttca 31644373  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 318
Target Start/End: Original strand, 4160334 - 4160443
Alignment:
Q  209 ggtgaccttactggaatcaaaaaacattttagccgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagatt 308  Q
    |||||||| ||||||||||| || || |||  | | || || ||||||||||| ||||| ||||| || || |||||| ||||||| ||||| || ||||    
T  4160334 ggtgacctaactggaatcaagaagcactttttcaggaagcacggtgagaagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggatt 4160433  T
Q  309 ggaaggctca 318  Q
    |||| |||||    
T  4160434 ggaaagctca 4160443  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 42287116 - 42287177
Alignment:
Q  251 ggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaa 312  Q
    ||||||||||| ||||||||||| || ||||| || | ||||||||||||||| || |||||    
T  42287116 ggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaa 42287177  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 42898066 - 42898365
Alignment:
Q  20 atggcaacaaatagatttgtgtgtgagatatgtaacaagggttttcagagggaccagaatcttcagttacaccgaagaggtcacaatcttccatggaaac 119  Q
    |||||||||||||||||  | |||||||| |||||||| || ||||| || || |||||||||||  | ||   |||||| |||||| | ||||||||      
T  42898066 atggcaacaaatagattcatttgtgagatctgtaacaaaggatttcaaagagatcagaatcttcaacttcataaaagaggacacaatttgccatggaagt 42898165  T
Q  120 ttaggcaaagaacaagtgcagaggtgaagaaaaaggtgtatgtgtgccctgagccatcatgcgttcaccataatccatctcgagcattaggtgaccttac 219  Q
    | | ||||||||||||    ||| | | ||| || || |||||||| || || ||| | || || |||||| | |||||  |||| || || ||||| ||    
T  42898166 tgaagcaaagaacaagcaatgagataaggaagaaagtttatgtgtgtccagaaccaacttgtgtgcaccatgacccatcaagagccttgggggacctaac 42898265  T
Q  220 tggaatcaaaaaacattttagccgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcac 319  Q
    ||| ||||| || || ||  || | || || ||||||||||| ||||||||||||||||||||||| |  ||||| ||||||||||| ||||| ||||||    
T  42898266 tggtatcaagaagcacttctgcagaaagcacggtgagaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctcac 42898365  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 40040582 - 40040665
Alignment:
Q  48 tatgtaacaagggttttcagagggaccagaatcttcagttacaccgaagaggtcacaatcttccatggaaacttaggcaaagaa 131  Q
    |||| |||||||||||| |||| ||||| || || ||| |||| ||| |||| ||||||||||||||||| |||| ||||||||    
T  40040582 tatgcaacaagggttttaagagagaccaaaacctacagctacatcgacgaggacacaatcttccatggaagcttaagcaaagaa 40040665  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 40040788 - 40040855
Alignment:
Q  251 ggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctca 318  Q
    ||||||||||| ||||| ||||| ||||| ||||| | |||||| |||||||| ||||||||||||||    
T  40040788 ggtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattggaaggctca 40040855  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 38895990 - 38895896
Alignment:
Q  245 aaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactag 339  Q
    ||||| ||||||||||| ||||| ||||| |||||||| |||   |||||||||||||| |||||||| || |||   || ||||||||||||||    
T  38895990 aaacacggtgagaagaagtggaagtgtgagaagtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactag 38895896  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 339
Target Start/End: Complemental strand, 30518278 - 30518187
Alignment:
Q  248 catggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactag 339  Q
    |||||||| ||||| ||||| ||||| |||||||| ||| | ||||||||||| ||||||||||| ||||||   ||||| |||||||||||    
T  30518278 catggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactag 30518187  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 22085639 - 22085566
Alignment:
Q  245 aaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctca 318  Q
    ||||||||||||||||| ||||| ||||| ||||| || || | |||||| |||||||| |||||||| |||||    
T  22085639 aaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctca 22085566  T

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