View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_low_4 (Length: 259)
Name: NF6681_low_4
Description: NF6681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 40552559 - 40552786
Alignment:
| Q |
16 |
ttattcttcgtatctgttttatctttctgtaatatgataacaatattgattaatttcatgttttcaagtaaaggttctgtacagttgtgataaattatct |
115 |
Q |
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| T |
40552559 |
ttattcttcgtatctgttttatctttctgtaatatgataacaatattgattaatttcatgttttcaagtaaaggttctgtacagttatgataaattatct |
40552658 |
T |
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| Q |
116 |
ggtgatgtatatataacaataatatggcatatggaatttggtgtttatgtttaatgtcttaattccacgtccccattatatttggtgggtcaaaagattt |
215 |
Q |
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| T |
40552659 |
ggtgatgtataaataacaataatatggcatatggaatttggtgtttatgtttaatgtcttaattccacgtccccattatatttggtgggtcaaaagattt |
40552758 |
T |
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| Q |
216 |
atttatttttatgactatggttagtttc |
243 |
Q |
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| T |
40552759 |
atttatttttatgactatggttggtttc |
40552786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 22137532 - 22137753
Alignment:
| Q |
16 |
ttattcttcgtatctgttttatctttctgtaatatgataacaatattgattaatttcatgttttcaagtaaaggttctgtacagttgtgataaattatct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22137532 |
ttattcttcgtatctgttttatctttctgtaatatgataacaatattgattaatttcatgttttcaagtaaaggttctgtacagttatgataaattatct |
22137631 |
T |
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| Q |
116 |
ggtgatgtatatataacaataatatggcatatggaatttggtgtttatgtttaatgtcttaattccacgtccccattatatttggtgggtcaaaagattt |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22137632 |
ggtgatgtataaataacaataatatggcatatggaatttggtgtttatgtttaatgtcttaattccacgtccccattatatttggtgggtcaaaagattt |
22137731 |
T |
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| Q |
216 |
atttatttttatgactatggtt |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
22137732 |
atttatttttatgactatggtt |
22137753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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