View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6681_low_5 (Length: 258)
Name: NF6681_low_5
Description: NF6681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6681_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 40971714 - 40971876
Alignment:
| Q |
16 |
aatatgctggctatattgatatagatgtaaggcatgggagaagcctcttctattattttgttgaggctgatcatgaccctcacaaaaagcctctcaccct |
115 |
Q |
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| T |
40971714 |
aatatgctggctatattgatatagatgtaaggcatgggagaagcctcttctattattttgttgaggctgatcatgaccctcacaaaaagcctctcaccct |
40971813 |
T |
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| Q |
116 |
ttggctcaatggaggtaataatttgttaattattgtaatgtaatacaccaccccttttaatccttatt |
183 |
Q |
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| T |
40971814 |
ttggctcaatggaggtaataatttgttaattat-----tgtaatacaccaccccttttaatccttatt |
40971876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 40962018 - 40961897
Alignment:
| Q |
16 |
aatatgctggctatattgatatagatgtaaggcatgggagaagcctcttctattattttgttgaggctgatcatgaccctcacaaaaagcctctcaccct |
115 |
Q |
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| T |
40962018 |
aatatgctggttatgttgatatagatataaaacatgggaggagtctcttctattattttgttgaggctgaccatctccctcacaaaaagcctctcaccct |
40961919 |
T |
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| Q |
116 |
ttggctcaatggaggtaataat |
137 |
Q |
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| T |
40961918 |
atggctcaatggaggtaataat |
40961897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 40971900 - 40971940
Alignment:
| Q |
193 |
ttctattactatggcttttctaacagttgacacttgaatga |
233 |
Q |
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| T |
40971900 |
ttctattactatggcttttctaacagttgacacttgaatga |
40971940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 30906981 - 30906864
Alignment:
| Q |
16 |
aatatgctggctatattgatatagatgtaaggcatgggagaagcctcttctattattttgttgaggctgatcatgaccctcacaaaaagcctctcaccct |
115 |
Q |
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|||||||||| ||| ||||||| ||||||| ||||| |||||| | || |||||||||||||| ||||||||| | ||||| || || || ||||| || |
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| T |
30906981 |
aatatgctggttatgttgatattgatgtaaaacatggtagaagcttgttttattattttgttgaagctgatcataaacctcaaaataaacccctcactct |
30906882 |
T |
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| Q |
116 |
ttggctcaatggaggtaa |
133 |
Q |
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| T |
30906881 |
ttggctcaatggaggtaa |
30906864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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