View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_high_17 (Length: 386)
Name: NF6682_2D_high_17
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 2309962 - 2309688
Alignment:
| Q |
1 |
ttatattattgagaatctttgtaggccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccctgcgt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309962 |
ttatattattgagaatctttgtatgccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccctgcgt |
2309863 |
T |
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| Q |
101 |
ttcattcctctcaaaagttgttggtagagaaataaaacgggttcgtttcgtgtaaggaacagtttcagaagagtaaaatctcttaggtcctccgatgata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309862 |
ttcattcctctcaaaagttgttggtagagaaataaaacgggttcgtttcgtgtaaggaacagtttcagaagagtaaaatctcttaggtcctccgatgata |
2309763 |
T |
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| Q |
201 |
aatggattgtgaaatttgttgttgatttcaacactttttgttgtgcctaatctgtaggaaaatgctatgaatcag |
275 |
Q |
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| T |
2309762 |
aatggattgtgaaatttgttgttgatttcaacactttttgttgtgcctaatctgtaggaaaatgctatgaatcag |
2309688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 3 - 272
Target Start/End: Original strand, 2929084 - 2929356
Alignment:
| Q |
3 |
atattattgagaatctttgtaggccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccctgcgttt |
102 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2929084 |
atattattgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccctttgtta |
2929183 |
T |
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| Q |
103 |
cattcctctcaaaagttgttggtagagaaataaaacgggttcgtttcgtgtaaggaacagtttca---gaagagtaaaatctcttaggtcctccgatgat |
199 |
Q |
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| T |
2929184 |
cattcctctcaaaagttgttgctagacaaataaaacgggttcgtttcgtgtaaggaacagtttcaaataaagagtaaaatctcttgggtcctccaatgac |
2929283 |
T |
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| Q |
200 |
aaatggattgtgaaatttgttgttgatttcaacactttttgttgtgcctaatctgtaggaaaatgctatgaat |
272 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||||| |
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| T |
2929284 |
aaatggattgtgaaatttgttgttgatttcaacatttcttgttgtgcctgatctgttagaaaatgctatgaat |
2929356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 374
Target Start/End: Complemental strand, 2309641 - 2309598
Alignment:
| Q |
331 |
ttagcttcttcaatggtcagattctgttaatcaatgatgtccat |
374 |
Q |
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| T |
2309641 |
ttagcttcttcaatgttcagattctgttaatcaatgttgtccat |
2309598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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