View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_high_23 (Length: 340)
Name: NF6682_2D_high_23
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 336
Target Start/End: Original strand, 2309305 - 2309625
Alignment:
| Q |
16 |
acatcagagagggtagaccaaaagcaatttcagtgagttttatctaatcaaataaatataattccaaaaaactctcttgaaacaatcaattatcaaagtg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309305 |
acatcagagagggtagaccaaaagcaatttcagtgaattttatctaatcaaataaatataattccaaaaaactctcttgaaacaatcaattatcaaagtg |
2309404 |
T |
|
| Q |
116 |
cggcaccacaacgcacatgtgcgtaaatcctctaaagtccattaacacagcactgtcaaatagtggctatagtgtagcagaatctgaacaaacagctatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309405 |
cggcaccacaacgcacatgtgcgtaaatcctctaaagtccattaacacagcactgtcaaatagtggctatagtgtagcagaatctgaacaaacagctatt |
2309504 |
T |
|
| Q |
216 |
gttccgagatatggtattcagtgtacaatgtgttgtcaaatagcggcgctttaacatagaatttgatcaaaatgttatttttcgcaatccacaatggaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309505 |
gttccgagatatggtattcagtgtacaatgtgttgtcaaatagcggtgctttaacatagaatttgatcaaaatgttatttttcgcaatccacaatggaca |
2309604 |
T |
|
| Q |
316 |
acattgattaacagaatctga |
336 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2309605 |
acattgattaacagaatctga |
2309625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 2318444 - 2318751
Alignment:
| Q |
16 |
acatcagagagggtagaccaaaagcaatttcagtgagttttatctaatcaaataaatataattccaaaaaactctcttgaaacaatcaattatcaaagtg |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||| |||| || |||||| |||||||||||||||||||| |
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| T |
2318444 |
acataagagagggtagaccaaaagcaatcgtagtgaattttatccaatcaaacaaatataatttcaaacaagtctcttacaacaatcaattatcaaagtg |
2318543 |
T |
|
| Q |
116 |
cggcaccacaacgcacatgtgcgtaaatcctctaaagtccattaacacagcactgtcaaatagtggctatagtgtagcagaatctgaacaaacagctatt |
215 |
Q |
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| |||||| |||| | |||| |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
2318544 |
caacaccac--cgcataagtgcataaatcctctaaagtccattaacacaacgctgtcacatagtggctatagtgtagcagaatctgaacaaaccgctatt |
2318641 |
T |
|
| Q |
216 |
gttccgagatatggtattcagtgtacaatgtgttgtcaaatagcggcgctttaac-atagaatttgatcaaaatgttatttttcgcaatccacaatggac |
314 |
Q |
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|||| |||| ||||| || ||||||||| ||||||||||||||||||| |||| |||||||| | ||||||| |||||| |||||||||||||||| |
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| T |
2318642 |
gttctgagaaatggtgtt--ttgtacaatgcgttgtcaaatagcggcgctgtaacaatagaattcaaacaaaatgcgattttttgcaatccacaatggac |
2318739 |
T |
|
| Q |
315 |
aacattgattaa |
326 |
Q |
| |
|
|||||||||||| |
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| T |
2318740 |
aacattgattaa |
2318751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 16950230 - 16950266
Alignment:
| Q |
171 |
tcaaatagtggctatagtgtagcagaatctgaacaaa |
207 |
Q |
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||||||||||||||||| |||||||||| |||||||| |
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| T |
16950230 |
tcaaatagtggctatagcgtagcagaatttgaacaaa |
16950266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 18749341 - 18749293
Alignment:
| Q |
173 |
aaatagtggctatagtgtagcagaatctgaacaaacagctattgttccg |
221 |
Q |
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||||||||| |||||||||||||||| || ||||| |||||||||||| |
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|
| T |
18749341 |
aaatagtggttatagtgtagcagaatttggacaaaatgctattgttccg |
18749293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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