View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6682_2D_high_24 (Length: 336)

Name: NF6682_2D_high_24
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6682_2D_high_24
NF6682_2D_high_24
[»] chr1 (1 HSPs)
chr1 (20-271)||(40740944-40741196)
[»] chr7 (4 HSPs)
chr7 (260-315)||(11396023-11396078)
chr7 (260-315)||(11404045-11404100)
chr7 (260-315)||(11380645-11380700)
chr7 (260-313)||(11452730-11452783)
[»] chr8 (1 HSPs)
chr8 (260-314)||(35401304-35401358)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 40740944 - 40741196
Alignment:
Q  20 ctactataactacatcttgcgctaacaactctca-ttgtccgatctagatcgacggttgagatggtttcacgcggtaaattgcttatgtaatatagattg 118  Q
    ||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40740944 ctactataactacgtcttgtgctaacaattctcagttgtccgatctagatcgacggttgagatggtttcacgcggtaaattgcttatgtagtatagattg 40741043  T
Q  119 tttgattttaaattaactgttaatatttactactcagtgtaactgctcattttgaaccgtaggcaatttcaatactgaatcacgttcaagaggctgcaaa 218  Q
    |||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40741044 tttgatcttaaattaacggttaatatttactattgagtgtaactgctcattttgaaccgtaggcaatttcaatattgaatcacgttcaagaggctgcaaa 40741143  T
Q  219 actcctcccctcctaattgctttcgtatttatgtttgagaaatgcacatttca 271  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  40741144 actcctcccctcttacttgctttcgtatttatgtttgagaaatgcacatttca 40741196  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 11396023 - 11396078
Alignment:
Q  260 atgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacaca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11396023 atgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacaca 11396078  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 11404045 - 11404100
Alignment:
Q  260 atgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacaca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11404045 atgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacaca 11404100  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 11380645 - 11380700
Alignment:
Q  260 atgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacaca 315  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11380645 atgcacatttcacaaacacaatatagcacaaggtgcaccaatataacaacaacaca 11380700  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 11452730 - 11452783
Alignment:
Q  260 atgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaaca 313  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  11452730 atgcacatttcacaaacacaacatagcacaaggtgcaccaatgttacaacaaca 11452783  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 35401304 - 35401358
Alignment:
Q  260 atgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacac 314  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  35401304 atgcacatttcacaaacacaacatagcacaaggtgcaccaatattacaccaacac 35401358  T

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