View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_high_25 (Length: 334)
Name: NF6682_2D_high_25
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 45199076 - 45198776
Alignment:
| Q |
18 |
atgaattagatatattctaagcattactcttacaagctctttttggtgaaagatattggtatttagagattttcacatagactccacacaagctatcaaa |
117 |
Q |
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| T |
45199076 |
atgaattagatatattctaagcattactcttacaagctctttttggtgaaagatattggtatttagagattttcacatagactccacacaagctatcaaa |
45198977 |
T |
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| Q |
118 |
gggcatgcaacaattaaaagtacaacttacgatttgtgaccaaaggactaaagatgttccactatattatctgtcattactaatcataaactcaactatg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45198976 |
gggcatgcaacaattaaaagtacaacttacgatttgtgaccaaaggactaaagatgttccactatattatctgtcattactcatcataaactcaactatg |
45198877 |
T |
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| Q |
218 |
ccattactaa---attccaaatatttttctttacctttaatnnnnnnnntcaaaatattttgaaacaatgaacactcaacaaataaatgtcgagatgatt |
314 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45198876 |
ccattactaaattattccaaatatttttctttacctttaataaaaaaaatcaaaatattttgaaacaatgaacactcaacaaataaatgtcgagatgatt |
45198777 |
T |
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| Q |
315 |
c |
315 |
Q |
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| T |
45198776 |
c |
45198776 |
T |
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