View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6682_2D_high_29 (Length: 284)
Name: NF6682_2D_high_29
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_high_29 |
 | |
|
| [»] scaffold0328 (1 HSPs) |
| | |
|
| [»] scaffold0009 (3 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 22933833 - 22933587
Alignment:
| Q |
14 |
gtttggtgttggagctataactctgctcatattaagcctatgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatg |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22933833 |
gtttggtgttggacctataactctgctcatattaagcctatgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatg |
22933734 |
T |
|
| Q |
114 |
cttcggtaaattccattcgtaaatatctgtaaaaggatttaaaatgtgaaccatgattgaaaaactaaataaaatgttcgtcggataccaaaagatcatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22933733 |
cttcggtaaattccattcgtaaatatctgtaaaaggatttaaaatgtgaaccataattgaaaaactaaataaaatgttcgtcggataccaaaagatcatt |
22933634 |
T |
|
| Q |
214 |
gccaagacgaatgattttggcctcaaagaaagcctttacgatgaaaa |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22933633 |
gccaagacgaatgattttggcctcaaagaaagcctttacgatgaaaa |
22933587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 22981461 - 22981587
Alignment:
| Q |
16 |
ttggtgttggagctataactctgctcatattaagcctatgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgct |
115 |
Q |
| |
|
||||||||||| ||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |
|
|
| T |
22981461 |
ttggtgttggacctataacactgctcatttgaagcctatgaaatgtagcaatggatatcctctccttctttgaatttactgttcctctatgctcaatgct |
22981560 |
T |
|
| Q |
116 |
tcggtaaattccattcgtaaatatctg |
142 |
Q |
| |
|
||||||||||||||| || |||||||| |
|
|
| T |
22981561 |
tcggtaaattccattggttaatatctg |
22981587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 21351467 - 21351331
Alignment:
| Q |
17 |
tggtgttggagctataactctgctcatattaagcctatgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgctt |
116 |
Q |
| |
|
|||||||||| ||| || | ||||||| | | |||||||||||||||||| ||||||||||| ||| ||||||| | | || ||||||| ||||||||| |
|
|
| T |
21351467 |
tggtgttggacctagaattttgctcatttgagccctatgaaatgtagcaattgatatcctctcattcattgaattgattgttgctcgatgttcaatgctt |
21351368 |
T |
|
| Q |
117 |
cggtaaattccattcgtaaatatctgtaaaaggattt |
153 |
Q |
| |
|
||||||||||| || || |||||||| |||||||||| |
|
|
| T |
21351367 |
cggtaaattccgttagttaatatctgcaaaaggattt |
21351331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 21250994 - 21250913
Alignment:
| Q |
49 |
gcctatgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccatt |
130 |
Q |
| |
|
|||||||||||| ||||||||| ||||| || || | |||||| ||| || ||||||| |||||||||||||| |||||||| |
|
|
| T |
21250994 |
gcctatgaaatgcagcaatggaaatcctttctttttctgaattaactgttgctcgatgttcaatgcttcggtatattccatt |
21250913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 21212529 - 21212425
Alignment:
| Q |
54 |
tgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccattcgtaaatatctgtaaaaggattt |
153 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||| || | || ||||||| ||||| ||||| ||||| |||||||| | ||||||| ||| |||| |
|
|
| T |
21212529 |
tgaaatgtggcaatggaaatcctctccttctctgagttaatcgttgctcgatgttcaatacttcgataaataccattcgtcattatctgtcaaacaattt |
21212430 |
T |
|
| Q |
154 |
aaaat |
158 |
Q |
| |
|
||||| |
|
|
| T |
21212429 |
aaaat |
21212425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 9869 - 9781
Alignment:
| Q |
54 |
tgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccattcgtaaatatctg |
142 |
Q |
| |
|
||||||||||| || ||||||||||||||| |||||||||| || ||||||| ||||| |||| |||||||||||| || |||||||| |
|
|
| T |
9869 |
tgaaatgtagccatagatatcctctccttcactgaattcactgttgctcgatgttcaatacttctgtaaattccattggtcaatatctg |
9781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 22485 - 22608
Alignment:
| Q |
19 |
gtgttggagctataactctgctcatattaagcctatgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcg |
118 |
Q |
| |
|
|||||||| |||||||| ||||||| | | | || ||||||| ||||||||| |||||| | |||| |||||| || | ||||||| ||||||||||| |
|
|
| T |
22485 |
gtgttggacctataactttgctcatctgaggtctgtgaaatgcagcaatggaaatcctcgctttctctgaattaaccgtagctcgatgttcaatgcttcg |
22584 |
T |
|
| Q |
119 |
gtaaattccattcgtaaatatctg |
142 |
Q |
| |
|
||||||||||| || |||||||| |
|
|
| T |
22585 |
ataaattccatttgtcaatatctg |
22608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 257382 - 257437
Alignment:
| Q |
75 |
ctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccatt |
130 |
Q |
| |
|
|||||||||| |||||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
257382 |
ctctccttctctgaattcactgttgctcgatgttcaatgcttcggtaaattccatt |
257437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 214979 - 215055
Alignment:
| Q |
54 |
tgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccatt |
130 |
Q |
| |
|
||||||| ||||| || || |||||||||| |||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
214979 |
tgaaatgcagcaacagagattctctccttctccgaattcaccgttgctcgatgttcaatgcttcggtaaattccatt |
215055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 26913767 - 26913856
Alignment:
| Q |
54 |
tgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccattcgtaaatatctgt |
143 |
Q |
| |
|
|||||||| ||||| || ||||||||||||| ||| || | | || ||||||| ||||| ||||| ||||| |||||||| | ||||||| |
|
|
| T |
26913767 |
tgaaatgtggcaatcgaaatcctctccttctctgagttaattgttgctcgatgttcaatacttcgataaataccattcgtcattatctgt |
26913856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University