View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6682_2D_high_31 (Length: 280)
Name: NF6682_2D_high_31
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_high_31 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 172 - 280
Target Start/End: Original strand, 14119875 - 14119983
Alignment:
| Q |
172 |
gagatcgaacttattgaaacaatttatgacatgtttataaattgacaacatttccataaactctatatattagcttatgataactgtttgtagctttcat |
271 |
Q |
| |
|
||||||||| ||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14119875 |
gagatcgaatttagtgaaataatttataacatgtttataagttgacaacatttccataaactctatatattagcttatgataactgtttgtagctttcat |
14119974 |
T |
|
| Q |
272 |
gaaaattgt |
280 |
Q |
| |
|
||||||||| |
|
|
| T |
14119975 |
gaaaattgt |
14119983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 14118994 - 14119056
Alignment:
| Q |
116 |
ataaattagatattaatcagattattttctcatacgaacatttgcagattatttgggagatcg |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
14118994 |
ataaattagatattaatcagattattttctcatacgaacatttgcggattatttgagagatcg |
14119056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 28826336 - 28826414
Alignment:
| Q |
1 |
ttactctatatataccattgtaatatattttcatattcaatcaatgagaatacaaaaacttattctctgaaattctaca |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28826336 |
ttactctatatataccattgtaatatattttcatattcaatcaatgagaatacaaaaacttattctctgaaattctaca |
28826414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 3216806 - 3216726
Alignment:
| Q |
1 |
ttactctatatataccattgtaatatattttcatattcaatcaatgagaataca-aaaacttattctctgaaattctacaa |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3216806 |
ttactctatatataccattgtaatatattttcatattcaatcaatgagaatacaaaaaacttattctctgaaattctacaa |
3216726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University