View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6682_2D_high_36 (Length: 256)
Name: NF6682_2D_high_36
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_high_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 23977218 - 23977018
Alignment:
| Q |
53 |
tgagaaaaagttattaggtagttattttgttggcaaacttgttgtacaagtagccttcataatctcacttgttagtagttgttattactacaattaatct |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23977218 |
tgagaaaaagttattaggtagttattttgttggctaacttgttgtacaagtaaccttcataatctcacttgttagta---gttattactacaattaatct |
23977122 |
T |
|
| Q |
153 |
cacaattcttaaatcaaaaagtaact-nnnnnnnnttaaaatacattaataac-----atcactcacatgcacacacaatttactctaactcttacattt |
246 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23977121 |
cacaattcttaaatcaaaaagtaaataaaaaaaaactaaaatacattaataacatcaaatcactcacatgcacacacaatttactctaactcttacattt |
23977022 |
T |
|
| Q |
247 |
ctac |
250 |
Q |
| |
|
|||| |
|
|
| T |
23977021 |
ctac |
23977018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 23982393 - 23982444
Alignment:
| Q |
10 |
atgagaaacattatacacaatggaaatacaatattagttataatgagaaaaa |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23982393 |
atgagaaacattatacacaatggaaatacaatattagttatagtgagaaaaa |
23982444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University