View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_high_48 (Length: 208)
Name: NF6682_2D_high_48
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 19078282 - 19078473
Alignment:
| Q |
1 |
gctctccatcataaacattaatgcttaaagttggatttggattcaagtcaaaagggaattgatgaacaaagtctttagttgcatcaaaattttcaaggag |
100 |
Q |
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| T |
19078282 |
gctctccatcataaacattaatgcttaaagttggatttggattcaagtcaaaagggaattgatgaacaaagtctttagttgcatcaaatttttcaaggag |
19078381 |
T |
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| Q |
101 |
aagttttcacctatgtccccataatgaaatttatcaccaagttttgaatataaaagtgttccagttttcatcttaacagaaacaaaaaattt |
192 |
Q |
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| T |
19078382 |
aagttttcacctgttttcccataatgaaatttatcactaagttttcaatataaaagtgttccagttttcatcttaacagaaacaaaaaattt |
19078473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 18325896 - 18326038
Alignment:
| Q |
8 |
atcataaacattaatgcttaaagttggatttggattcaagtcaaaagggaattgatgaacaaagtctttagttgcatcaaaattttc-aaggagaagttt |
106 |
Q |
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| T |
18325896 |
atcataatcaataatgcttaaagttggttattgattcaactcaaaaaggaaatgcacaacaaagtcttttggttcattaattttttttaaagagaagttt |
18325995 |
T |
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| Q |
107 |
tcacctatgtccccataatgaaatttatcaccaagttttgaata |
150 |
Q |
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| T |
18325996 |
-cagctatgtccccataatgaaatttatcaccaagttttcaata |
18326038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 18439501 - 18439359
Alignment:
| Q |
8 |
atcataaacattaatgcttaaagttggatttggattcaagtcaaaagggaattgatgaacaaagtctttagttgcatcaaaattttc-aaggagaagttt |
106 |
Q |
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| T |
18439501 |
atcataatcaataatgcttaaagttggttattgattcaactcaaaaaggaaatgcacaacaaagtcttttggttcattaattttttttaaagagaagttt |
18439402 |
T |
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| Q |
107 |
tcacctatgtccccataatgaaatttatcaccaagttttgaata |
150 |
Q |
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| T |
18439401 |
-cagctatgtccccataatgaaatttatcaccaagttttcaata |
18439359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 17408287 - 17408194
Alignment:
| Q |
90 |
ttttcaaggagaagttttcacctatgtccccataatgaaatttatcaccaagttttgaatataaaagtgttcc-agttttcatcttaacagaaa |
182 |
Q |
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| T |
17408287 |
ttttcaaagagaagctttcagctatgtcaccagaatgaaatttatcactaaatttgcagtataaaagggttccaatttttcatcttaacagaaa |
17408194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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