View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_10 (Length: 716)
Name: NF6682_2D_low_10
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 22 - 699
Target Start/End: Complemental strand, 35067181 - 35066504
Alignment:
| Q |
22 |
gttggcatcaccctttcttcctataatgttgatttagtgacnnnnnnnatcatctacataatttcttctttactttgttgatagtagatgcgttggatcc |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35067181 |
gttggcatcaccctttcttcctataatgttgatttagtgactttttt-atcatctacaaaatttcttctttactttgttgatagtagatgcgttggatcc |
35067083 |
T |
|
| Q |
122 |
gttttctccgatgaagagcctaagttgaaaccgcaatggagagtgttactttagtcggtgttgccgtgaccatcattttatagggtttttgtggctgctt |
221 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||| |
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| T |
35067082 |
gttttctccgatgaagagcctaagttgaaaccgctatggagagtgttactttagtcagtgttaccgtgagcatcgttttatagggtttttgtggctgctt |
35066983 |
T |
|
| Q |
222 |
tgagaatgctacatttggagattcaattccactannnnnnnn-cttctcaatgtaacatacagtaatgttaattaacctatggaaacacccttgccattg |
320 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35066982 |
tgagaatgctacatttggagattcaattccaatatttttttttcttctcaatgtaacatacagtaatgttaattaacctatggaaacacccttgccattg |
35066883 |
T |
|
| Q |
321 |
cattttgatagcactgtcttgatttgtgacaatagttttaggacaaacccccgcctgttgcttctaatcaagtacttaacaaccaaacaaatatctcttc |
420 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35066882 |
cattttgatagcagtgtcttgatttgtgacaatagttttaggacaaacccccgcctgttgcttctaatcaagtacttaacaaccaaacaaatatctcttc |
35066783 |
T |
|
| Q |
421 |
attttcatgggtgcaaagattctctctccatttgcaggggacaatccctggtttaggccctggcaaaacactgacaacccatgtgttgtgttacatcact |
520 |
Q |
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||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35066782 |
attttcatgggtgcaaagattctctctccatttgccgagggcaatccctggtttaggccctggcaaaacactgacaacccatgtgttgtgttacatcact |
35066683 |
T |
|
| Q |
521 |
cagtttcaaacaaatttgaaatggagggaggttttctgcctcaaatttcttagaggttcaaatatgttttccaagggttaaccctcgtcttaacccttgt |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35066682 |
cagtttcaaacaaatttgaaatggagggaggttttctgcctcaaatttctcagaggttcaagtatgttttccaagggttaaccctcgtcttaacccttgt |
35066583 |
T |
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| Q |
621 |
catacccaaatctcttaaaatatattttctcaggcgtacccgtgtctctaccccttgacaaatttcctaggggttgatg |
699 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
35066582 |
catacccaaatctcttaaaatatattttctcaggcgtacccgtgtctctaccccctgacaaatttcctagggattgatg |
35066504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 428
Target Start/End: Complemental strand, 64714 - 64622
Alignment:
| Q |
335 |
tgtcttgatttgtgacaatagttttaggacaaacccccgcctgttgcttctaatcaagtacttaacaaccaaacaaatatctcttcattttcat |
428 |
Q |
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||||||||| |||| |||||||||||||| ||| || || |||||||||| ||||||| || |||||||||||| |||||||| |||||| |
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| T |
64714 |
tgtcttgatcagtgataatagttttaggactaactccatcca-ttgcttctaaccaagtacgtagcaaccaaacaaaactctcttcagtttcat |
64622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 400
Target Start/End: Complemental strand, 22639421 - 22639297
Alignment:
| Q |
276 |
acatacagtaatgttaattaacctatggaaacacccttgccattgcattt-tgatagcactgtcttgatttgtgacaatagttttaggacaaacccccgc |
374 |
Q |
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||||||||||||| | |||||| | |||||||| ||||| | |||||| ||||||||||| | || | ||||| ||||||||||||||| ||||| | |
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| T |
22639421 |
acatacagtaatgatgattaacattcggaaacactcttgcaactgcattagtgatagcactggcctggtatgtgataatagttttaggacataccccgga |
22639322 |
T |
|
| Q |
375 |
ctgttgcttctaatcaagtacttaac |
400 |
Q |
| |
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| |||||||||| |||||| ||||| |
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| T |
22639321 |
c-attgcttctaaccaagtatttaac |
22639297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 428
Target Start/End: Complemental strand, 16081077 - 16080985
Alignment:
| Q |
335 |
tgtcttgatttgtgacaatagttttaggacaaacccccgcctgttgcttctaatcaagtacttaacaaccaaacaaatatctcttcattttcat |
428 |
Q |
| |
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||||||||| |||| |||||||||||||| ||| || || |||||||||| ||||||| || |||||||||||| |||||||| |||||| |
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| T |
16081077 |
tgtcttgatcagtgataatagttttaggactaactccatcca-ttgcttctaaccaagtacgtagcaaccaaacaaaactctcttcagtttcat |
16080985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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