View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6682_2D_low_101 (Length: 212)

Name: NF6682_2D_low_101
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6682_2D_low_101
NF6682_2D_low_101
[»] chr3 (10 HSPs)
chr3 (20-212)||(47212415-47212607)
chr3 (32-119)||(26714016-26714103)
chr3 (32-119)||(26737252-26737339)
chr3 (30-119)||(26751186-26751275)
chr3 (34-119)||(26698866-26698951)
chr3 (30-119)||(26744261-26744350)
chr3 (34-96)||(26690365-26690427)
chr3 (34-96)||(26694526-26694588)
chr3 (34-96)||(26731676-26731738)
chr3 (34-107)||(26734029-26734102)
[»] chr7 (6 HSPs)
chr7 (22-197)||(29213179-29213357)
chr7 (47-140)||(21130636-21130729)
chr7 (46-140)||(18658797-18658891)
chr7 (30-96)||(21098527-21098593)
chr7 (30-96)||(21108146-21108212)
chr7 (46-140)||(21111675-21111769)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-103; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 47212415 - 47212607
Alignment:
Q  20 acacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47212415 acacaagcattctatgttttccctctgcacaataaccccacatttcaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactc 47212514  T
Q  120 ttcttcgccttgatttgcttccttgagtctcttcaccgcgacaactcgttgatccaacaatacacctttgtaaacaattcctcctgcgccttt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47212515 ttcttcgccttgatttgcttccttgagtctcttcaccgcgacaactcgttgatccaacaatacacctttgtaaacaattcctcctgcgccttt 47212607  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 26714016 - 26714103
Alignment:
Q  32 tatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactc 119  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||| ||||||||    
T  26714016 tatgttttccctcagcacaataaccccacattccaatcaaattcatgtggttaagccttccaatgatgctaacttctgcaagaaactc 26714103  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 26737252 - 26737339
Alignment:
Q  32 tatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactc 119  Q
    ||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| |||||||| |||| |||||||| ||||||||    
T  26737252 tatgttttccctcagcacaataaccccacattccaattaaattcatgtggttaagccttccaatgatgctaacttctgcaagaaactc 26737339  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 26751186 - 26751275
Alignment:
Q  30 tctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactc 119  Q
    |||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||| |||||||| |||| ||||| || ||||||||    
T  26751186 tctatgctttccctcagcacaataaccccacataccaatcaaattcatgtggttaagccttccaatgatgctaacttcggcaagaaactc 26751275  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 26698866 - 26698951
Alignment:
Q  34 tgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactc 119  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||| |||||| |||||||| |||| ||||| || ||||||||    
T  26698866 tgttttccctcggcacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaacttcagcaagaaactc 26698951  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 26744261 - 26744350
Alignment:
Q  30 tctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactc 119  Q
    ||||||||||||||| |||||||| ||||||||  |||| || ||||||||||||||| |||||||| |||||||||| || ||||||||    
T  26744261 tctatgttttccctcagcacaatagccccacataccaattaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 26744350  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 26690427 - 26690365
Alignment:
Q  34 tgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatg 96  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||||    
T  26690427 tgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatg 26690365  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 26694588 - 26694526
Alignment:
Q  34 tgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatg 96  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||||    
T  26694588 tgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatg 26694526  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 26731738 - 26731676
Alignment:
Q  34 tgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatg 96  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||||    
T  26731738 tgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatg 26731676  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 26734029 - 26734102
Alignment:
Q  34 tgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttc 107  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||| |||||| |||||||| |||| |||||    
T  26734029 tgttttccctcggcacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaacttc 26734102  T

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Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 29213179 - 29213357
Alignment:
Q  22 acaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaa---tgctgcttacttctgcgagaaact 118  Q
    |||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||   ||||  ||||||  ||  | ||||    
T  29213179 acaaacattctatgtattccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttccaatattgctaattactttggcttggaact 29213278  T
Q  119 cttcttcgccttgatttgcttccttgagtctcttcaccgcgacaactcgttgatccaacaatacacctttgtaaacaat 197  Q
    ||||||| |||||||| |||||||||||||||||| | |  |||||| |||||| ||||||||||||||||||||||||    
T  29213279 cttcttcaccttgattagcttccttgagtctcttcgctgtaacaacttgttgatacaacaatacacctttgtaaacaat 29213357  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 21130636 - 21130729
Alignment:
Q  47 cacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactcttcttcgccttgatttgcttc 140  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||| || ||||||||| |||| ||||| || |||||    
T  21130636 cacaatatccccacatttcaatcaaattcatgtggttaagcttttcaatgatgcttacttcagcaagaaactctccttctccttgtttagcttc 21130729  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 18658797 - 18658891
Alignment:
Q  46 gcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactcttcttcgccttgatttgcttc 140  Q
    |||||||| ||||||||  ||||||| |||||||||||||||  ||||||| |||||||||| || ||||| ||| |||| ||||| || |||||    
T  18658797 gcacaatatccccacatatcaatcaagttcatgtggttaagccgtccaatgatgcttacttcagcaagaaattctccttctccttgtttagcttc 18658891  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 21098593 - 21098527
Alignment:
Q  30 tctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatg 96  Q
    ||||| ||||||||| || ||||| ||||||||| | |||||||||||||| |||||| ||||||||    
T  21098593 tctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatg 21098527  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 21108212 - 21108146
Alignment:
Q  30 tctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatg 96  Q
    ||||| ||||||||| || ||||| ||||||||| | |||||||||||||| |||||| ||||||||    
T  21108212 tctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatg 21108146  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 21111675 - 21111769
Alignment:
Q  46 gcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactcttcttcgccttgatttgcttc 140  Q
    |||||||| ||||||||| | ||||| |||||||||||||||  ||||||| | |||||||| || ||||| ||| |||| ||||| || |||||    
T  21111675 gcacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgatacttacttcggcaagaaattctccttctccttgtttagcttc 21111769  T

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