View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_14 (Length: 583)
Name: NF6682_2D_low_14
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 17 - 568
Target Start/End: Complemental strand, 31504205 - 31503654
Alignment:
| Q |
17 |
tggtggttctctggtggcgcggaggttgtgatacgcggtgtttgaggaggtcatgaggcgatggttcagctggagattgtgattgtggtgatgtagtggt |
116 |
Q |
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| T |
31504205 |
tggtggttctctggtggtgcggaggttgtgatacgtggtgtttgaggaggtcatgaggcggtggttcagttggagattgtgatggtggtgatgtagtggt |
31504106 |
T |
|
| Q |
117 |
ggattgtaggtggtgagagagtgtgtcatcgatggtgtcaacgaatttggtggttaaaggtggttgttgaggcggcatttcggctttggggagttggttt |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31504105 |
ggattgtaggtggtgagagagtgtatcatcgatggtgtcaacgaatttggtggttaaaggtggttgttgaggcggcatgtcggctttggggagttggttt |
31504006 |
T |
|
| Q |
217 |
tttgttttagcctacataagggtgactttttgagacattatctttgctt-ttttcgtgggtgtctcggttggtgattgtgtggtggttatgggtggttag |
315 |
Q |
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| T |
31504005 |
atcgttttagcctacataagggtgactttga-agacattatctttgcttgttttcgtgggtgtctcgcttggtgattgtgtggtggttatgggtggttag |
31503907 |
T |
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| Q |
316 |
ttgtggctcacagggtggttagagatggtgttggttttgcatggttgtttgttttgctgcgagatggttaggggagatagtggacgtgtaagtttgagtg |
415 |
Q |
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| T |
31503906 |
ttgtggctcacagggtggttagagatggtgttggttttgcatggttgtttgttttgctgcgagatggttaggggagatagtggaggtgtaagtttgagtg |
31503807 |
T |
|
| Q |
416 |
gtggtttatggtaattgtagtggtgtggttggaaggggtggtcgtggataatctggacttagatctgaagtcgaaacatttgatcgacgagagctgatta |
515 |
Q |
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| T |
31503806 |
gtggtttatggtaattgtagtggcgtggttggaaggggtggtcgtggataatctagactcagatctgaagtcgaaacatttgatggacgagagctgatta |
31503707 |
T |
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| Q |
516 |
acaggggatggtagacattggttaggtaggaaggtagatgtttttatggtgtt |
568 |
Q |
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| T |
31503706 |
acaggggatggtagacattggttaggtaggaaggtggatgtttttatggtgtt |
31503654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 373 - 474
Target Start/End: Complemental strand, 1820583 - 1820481
Alignment:
| Q |
373 |
tgcgagatggttaggggagatagtggacgtgtaagtttgagtggtggtttatggtaattgtagtggtgtggttggaa-ggggtggtcgtggataatctgg |
471 |
Q |
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|||||||||||| |||||| |||| | |||| ||||||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||| || |
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| T |
1820583 |
tgcgagatggttgggggaggaagtgtaggtgttggtttgagtggtcatttatggtagcagtagtggtgtggtttgaatggggtggtcgtggataatccgg |
1820484 |
T |
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| Q |
472 |
act |
474 |
Q |
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||| |
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| T |
1820483 |
act |
1820481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 481
Target Start/End: Original strand, 5746229 - 5746335
Alignment:
| Q |
376 |
gagatggttaggggagatagtggacgtgtaagtttgagtggtggtttatggtaattgtagtggtgtggt-tggaaggggtggtcgtggataatctggact |
474 |
Q |
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||||||||| |||||| |||| | |||| || |||||||||| |||||||| |||| |||||||| |||| |||||||||||||||||| |||||| |
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| T |
5746229 |
gagatggttgggggaggaagtgcaggtgttagattgagtggtgatttatggtggcggtagcggtgtggtctggatggggtggtcgtggataatttggact |
5746328 |
T |
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| Q |
475 |
tagatct |
481 |
Q |
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|||||| |
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| T |
5746329 |
cagatct |
5746335 |
T |
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