View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6682_2D_low_16 (Length: 564)

Name: NF6682_2D_low_16
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6682_2D_low_16
NF6682_2D_low_16
[»] chr7 (2 HSPs)
chr7 (14-384)||(36862109-36862478)
chr7 (453-548)||(36861944-36862040)
[»] chr5 (5 HSPs)
chr5 (14-384)||(35027253-35027620)
chr5 (37-222)||(35023482-35023672)
chr5 (475-548)||(35027689-35027763)
chr5 (289-336)||(5376982-5377029)
chr5 (285-381)||(7873087-7873183)
[»] chr3 (1 HSPs)
chr3 (257-348)||(25719720-25719809)
[»] chr4 (2 HSPs)
chr4 (299-350)||(24795792-24795843)
chr4 (254-302)||(51650649-51650697)
[»] chr8 (1 HSPs)
chr8 (289-332)||(5998616-5998659)
[»] chr6 (1 HSPs)
chr6 (258-336)||(2783002-2783080)
[»] chr2 (2 HSPs)
chr2 (291-369)||(16067532-16067610)
chr2 (291-340)||(29509809-29509858)


Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 36862478 - 36862109
Alignment:
Q  14 catctgtaacagtcaaaatatccacatgactgcttatgatactttttatcctgaatccctttgtctgtatcactttcctttgtctagaaaaatattcatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36862478 catctgtaacagtcaaaatatccacatgactgcttatgatactttttatcctgaatccctttgtctgtatcacattcctttgtctagaaaaatattcatt 36862379  T
Q  114 tgctttggtagaatcctcatcttctgcactgcaaaaatagaacatattggtgcttaaaatgtgattctcacatactttgtgtatgtttggtacaaagtgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36862378 tgctttggtagaatcctcatcttctgcactgcaaaaatagaacatattgctgcttaaaatgtgattctcacatactttgtgtatgtttggtacaaagtgt 36862279  T
Q  214 agcaatatactagcaaacaagtccacatatactttgttgatcaacaatgagtttgtcaaaatcatggtggtaccataattttgtcgaagctctaaagtgt 313  Q
    |||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  36862278 agcaatatactagcaaacaagt-cacatatactttgttaatgaacaatgagtttgtcaaaatcacggtggtatcataattttgtcgaagctctaaagtgt 36862180  T
Q  314 agcttttatcaaaatcacagtggttcaatgtgatttttacaatcgcactgtcaatccaaacatgtactttg 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36862179 agcttttatcaaaatcacagtggttcaatgtgatttttacaatcgcactgtcaatccaaacatgtactttg 36862109  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 453 - 548
Target Start/End: Complemental strand, 36862040 - 36861944
Alignment:
Q  453 cgaagacaccttagatatctataaaacaacatttgtggtttttcgtcaaccattatc-agggtatatgggtggaacataatacctcatcatcaatga 548  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  36862040 cgaagacaccctagatatctataaaacaacatttgtggtttttcgtcaaccattatctagggtatatggatggaacataatacctcatcatcaatga 36861944  T

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Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 384
Target Start/End: Original strand, 35027253 - 35027620
Alignment:
Q  14 catctgtaacagtcaaaatatccacatgactgcttatgatactttttatcctgaatccctttgtctgtatcactttcctttgtctagaaaaatattcatt 113  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||||||    
T  35027253 catctgtaacagtcaaaatatcaacatgactgcttatgatacttttgatcctgaagccttttgtctgtatcacattcctttgtctagaaaaatattcatt 35027352  T
Q  114 tgctttggtagaatcctcatcttctgcactgcaaaaatagaacatattggtgcttaaaatgtgattctcacatactttgtgtatgtttggtacaaagtgt 213  Q
    | ||||||||||||| ||||| ||||| ||||||||  ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  35027353 ttctttggtagaatcttcatcatctgctctgcaaaatcagaacatattggtgcttaaaatgtggttctcacataatttgtgtatgtttggtacaaagtgt 35027452  T
Q  214 agcaatatactagcaaacaagtccacatatactttgttgatcaacaatgagtttgtcaaaatcatggtggtaccataattttgtcgaagctctaaagtgt 313  Q
    ||||||||||||| ||||| || |||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||    
T  35027453 agcaatatactaggaaacatgt-cacatatactttgtggatgaacaatgagtttgtcaaaatcaaggtggtaccgtaattttgttgaagctctgaagtgt 35027551  T
Q  314 agcttttatcaaaatcacagtggttcaatgtgatttttacaatcgcactgtcaatccaaacatgtactttg 384  Q
    |||||||||||||||  ||||||||||||||||||||||||||  ||| ||||||||||||| ||||||||    
T  35027552 agcttttatcaaaat--cagtggttcaatgtgatttttacaatgacaccgtcaatccaaacacgtactttg 35027620  T

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Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 35023482 - 35023672
Alignment:
Q  37 acatgactgcttatgatactttttatcctgaatccctttgtctgtatcactttcctttgtctagaaaaatattcatttgctttggtagaatcctcatctt 136  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| || |||||||| || | ||||||||||||  ||||||||||||| ||| |||    
T  35023482 acatgactgcttatgatactttttattctgaatctctttgtctgtattacattcctttgcctggtaaaatattcattctctttggtagaatcttcacctt 35023581  T
Q  137 ctgcactgcaaaaatagaacatattggt-gcttaaaatgtgattc----tcacatactttgtgtatgtttggtacaaagtgtagcaatata 222  Q
    |||| ||||||||| ||||||||||||| ||||||||||||  ||    |||||||||||||||||||||||| |||||||||||||||||    
T  35023582 ctgctctgcaaaaacagaacatattggtggcttaaaatgtggctctcattcacatactttgtgtatgtttggtccaaagtgtagcaatata 35023672  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 475 - 548
Target Start/End: Original strand, 35027689 - 35027763
Alignment:
Q  475 aaaacaacatttgtggtttttcgtcaaccattatc-agggtatatgggtggaacataatacctcatcatcaatga 548  Q
    ||||||| ||| |||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  35027689 aaaacaatattggtggtttttcttcaaccattatctaggatatatgggtggaaaataatacctcatcatcaatga 35027763  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 5377029 - 5376982
Alignment:
Q  289 taattttgtcgaagctctaaagtgtagcttttatcaaaatcacagtgg 336  Q
    ||||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  5377029 taattttgttgaagctctaaaatgtagcttttatcaaaatctcagtgg 5376982  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 381
Target Start/End: Original strand, 7873087 - 7873183
Alignment:
Q  285 accataattttgtcgaagctctaaagtgtagcttttatcaaaatcacagtggttcaatgtgatttttacaatcgcactgtcaatccaaacatgtact 381  Q
    ||||| ||||||| |||||| |||| |||| ||||| ||||||| |||||||||||  |||||| |   || | ||| |||||||||||||||||||    
T  7873087 accatgattttgttgaagctataaaatgtaacttttgtcaaaattacagtggttcaccgtgattatgttaaactcaccgtcaatccaaacatgtact 7873183  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 348
Target Start/End: Complemental strand, 25719809 - 25719720
Alignment:
Q  257 acaatgagtttgtcaaaatcatggtggtaccataattttgtcgaagctctaaagtgtagcttttatcaaaatcacagtggttcaatgtgatt 348  Q
    ||||||| |||| |||||||||| ||||||| | ||||||| |||||||||||||||||||||  |||||||||| || | ||| |||||||    
T  25719809 acaatgaatttgccaaaatcatgatggtaccgtgattttgttgaagctctaaagtgtagcttt--tcaaaatcacggtagctcattgtgatt 25719720  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 24795792 - 24795843
Alignment:
Q  299 gaagctctaaagtgtagcttttatcaaaatcacagtggttcaatgtgatttt 350  Q
    |||||||||||||||||||| |||||||||||| |||| ||| |||||||||    
T  24795792 gaagctctaaagtgtagcttatatcaaaatcacggtggatcagtgtgatttt 24795843  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 51650697 - 51650649
Alignment:
Q  254 tcaacaatgagtttgtcaaaatcatggtggtaccataattttgtcgaag 302  Q
    ||||||||||||||| |||||||||||||||||| | ||||||| ||||    
T  51650697 tcaacaatgagtttggcaaaatcatggtggtaccctgattttgttgaag 51650649  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 5998616 - 5998659
Alignment:
Q  289 taattttgtcgaagctctaaagtgtagcttttatcaaaatcaca 332  Q
    |||||||| ||||||| ||||||||||||||| |||||||||||    
T  5998616 taattttgccgaagctttaaagtgtagcttttgtcaaaatcaca 5998659  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 2783080 - 2783002
Alignment:
Q  258 caatgagtttgtcaaaatcatggtggtaccataattttgtcgaagctctaaagtgtagcttttatcaaaatcacagtgg 336  Q
    |||||||||||   ||||||  |||||||||| ||||||| ||||||| |||||| |||||| | |||||||| |||||    
T  2783080 caatgagtttggtgaaatcacagtggtaccatgattttgttgaagctccaaagtgcagctttcaacaaaatcatagtgg 2783002  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 369
Target Start/End: Original strand, 16067532 - 16067610
Alignment:
Q  291 attttgtcgaagctctaaagtgtagcttttatcaaaatcacagtggttcaatgtgatttttacaatcgcactgtcaatc 369  Q
    ||||||| || ||| |||||||||| |||||||||||| ||||||||||| ||| ||| | | |||| ||| |||||||    
T  16067532 attttgttgatgctttaaagtgtagtttttatcaaaattacagtggttcactgtaattatgagaatctcaccgtcaatc 16067610  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 29509858 - 29509809
Alignment:
Q  291 attttgtcgaagctctaaagtgtagcttttatcaaaatcacagtggttca 340  Q
    ||||||| ||||||| |||||||||||||| | |||||||| ||||||||    
T  29509858 attttgttgaagctcgaaagtgtagcttttgttaaaatcacggtggttca 29509809  T

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