View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_19 (Length: 550)
Name: NF6682_2D_low_19
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 101; Significance: 8e-50; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 156 - 385
Target Start/End: Complemental strand, 30936811 - 30936582
Alignment:
| Q |
156 |
ttgaatctcttaaatgtcaacaattcatgtgttgggtcggtccatacacaacttgtggtccctctag--tggacagtgaaacttgatccatgaattagtc |
253 |
Q |
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| T |
30936811 |
ttgaatcccttaaatgtcaacaatttgcgtgttgagttggtccatacaaagcttgtgttccctctataatggacggtgaaatttgatcc-tgaattagtc |
30936713 |
T |
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| Q |
254 |
gatcactagagcggataacagttttcaataaacatgtgttctaannnnnnnnctatgtgatgaattggtcaagggaaatttgtgtaaccgtgcttcataa |
353 |
Q |
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| T |
30936712 |
gatcattagagcggataacagttttcaatacacatatgtcctaatttttttcc-atgtgatgaatcggtcaagggaaatttgtgtaaccgtggttcataa |
30936614 |
T |
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| Q |
354 |
gtttatcttgactttcctgccgcttccttctt |
385 |
Q |
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| T |
30936613 |
gtttatcttgactttccagccccttccttctt |
30936582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 376 - 531
Target Start/End: Complemental strand, 30936453 - 30936305
Alignment:
| Q |
376 |
cttccttctttacttccacgtttcagggcagacagaacaaccttggtgcttgagaatttccagtcccagagtttcttggttcccaaggtgagtgagattt |
475 |
Q |
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| T |
30936453 |
cttccttctttacttccacgttttaaggcagacagaacaacgttggttcctgagaatttccac------agtttcttggttcccaaggttagtgagactt |
30936360 |
T |
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| Q |
476 |
tctgtcaccactttttgttacttggttgcttaatttgcatgtatgaaacttactat |
531 |
Q |
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| T |
30936359 |
tctgtctccactttttgttacttggttgcttaattt-catgtatgaaacttactat |
30936305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 441 - 519
Target Start/End: Complemental strand, 30966538 - 30966460
Alignment:
| Q |
441 |
ccagagtttcttggttcccaaggtgagtgagattttctgtcaccactttttgttacttggttgcttaatttgcatgtat |
519 |
Q |
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| T |
30966538 |
ccagagtttcttggttcccaaggtgagcgagactttctgtcaccactttttgttagttggttgcttaatttgcatgtat |
30966460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 30957687 - 30957647
Alignment:
| Q |
376 |
cttccttctttacttccacgtttcagggcagacagaacaac |
416 |
Q |
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| T |
30957687 |
cttccttctttacttccacgtttcagggcagacagaacaac |
30957647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 30936931 - 30936872
Alignment:
| Q |
65 |
attggacttttctaaaactaaatgtacaactctttaaaacaaatatgtttctcggggttg |
124 |
Q |
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| T |
30936931 |
attggacttttcaaaaactgaatgtagaactctttaaaacaaacatgtctctcggggttg |
30936872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 5630396 - 5630335
Alignment:
| Q |
142 |
tctatgtctcaggtttgaatctcttaaatgtcaacaattcatgtgttgggtcggtccataca |
203 |
Q |
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| T |
5630396 |
tctaggtctcaggtttgaaacccttagatgccaacaattcatgtgtcgggtcagttcataca |
5630335 |
T |
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