View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_23 (Length: 459)
Name: NF6682_2D_low_23
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_23 |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 2245106 - 2244688
Alignment:
| Q |
18 |
gaggaccaaatgcctaacttgtacatagtaattgaattctaagacttgtacatatgtgggcagattgcattctactatggttataggtgcaaattgcatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2245106 |
gaggaccaaatgcctaacttgtacatagtaattgaattctaagacttgtacatatgtgggcagattgcattccactatggttataggtgcaaattgcatt |
2245007 |
T |
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| Q |
118 |
caagaaataaattatgcataagagcatgcatggcatgttgtgaccggtgcaaatgtgtccctctaagaacttattgtaacagagaaaaatgtggcaagtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
2245006 |
caagaaataaattatgcataagagcatgcatggcatgtcgtgaccggtgcaaatgtgtccctctaagaacttattgtagcaaagaaaaatgtggcaagtg |
2244907 |
T |
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| Q |
218 |
ctacactgatatgttgactcatggcaatagacctaagtgtccataaatacatatatatatgttgttaatcaattattacaagttcaacaaagtttgggtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2244906 |
ctacactgatatgttgactcatggcaatagacctaagtgtccataaatacat----atatgttgttaatcaattattacaagttcaacaaagtttgggtt |
2244811 |
T |
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| Q |
318 |
gtctatgtaatatgatccttgtggtccaaaaattttgaatttatatattgaaattaaatggtattatcatggaagtatattttgctatggaaaattcagg |
417 |
Q |
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| T |
2244810 |
gtctatgtaatatgatccttgtggtccaaaatttttgaatttatatactgaaattaaatggtattatcatggaagtatattttgctatggaaaattcagg |
2244711 |
T |
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| Q |
418 |
agtgcaattaatatgatatgaac |
440 |
Q |
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| T |
2244710 |
agtgcaattaatatgatatgaac |
2244688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 72 - 275
Target Start/End: Original strand, 2125695 - 2125900
Alignment:
| Q |
72 |
tgtgggcagattgcattctactatg--gttataggtgcaaattgcattcaagaaataaattatgcataagagcatgcatggcatgttgtgaccggtgcaa |
169 |
Q |
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|||||||||||||||||| |||||| ||||||||||| || ||||| || | || ||||||||||||||||||| | ||||||||||||||||| |
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| T |
2125695 |
tgtgggcagattgcattccactatgtggttataggtgccaaaaacattctaggcaaaacacatgcataagagcatgcatgacttgttgtgaccggtgcaa |
2125794 |
T |
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| Q |
170 |
atgtgtccctctaagaacttattgtaacagagaaaaatgtggcaagtgctacactgatatgttgactcatggcaatagacctaagtgtccataaatacat |
269 |
Q |
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|||||| |||| | |||||||| |||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
2125795 |
atgtgttcctccaggaacttatggtaatagagaaaaatgtggcaagtgttacactgatatggtgactcatggcaatagacctaagtgtccatagatacat |
2125894 |
T |
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| Q |
270 |
atatat |
275 |
Q |
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| |||| |
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| T |
2125895 |
acatat |
2125900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 274 - 436
Target Start/End: Original strand, 2125958 - 2126118
Alignment:
| Q |
274 |
atatgttgttaatcaattattacaagttcaacaaagtttgggttgtctatgtaatatgatccttgtggtccaaaaattttgaatttatatattgaaatta |
373 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
2125958 |
atatgttgttaatcaattattacaagttcaacactttttgtgttgtctatgtaatatgatccttgtggtccaagaattttgaatt--tatattgaaatta |
2126055 |
T |
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| Q |
374 |
aatggtattatcatggaagtatattttgctatggaaaattcaggagtgcaattaatatgatat |
436 |
Q |
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| T |
2126056 |
aatggtattgttatggaagcatattttgctagtggaaatttaggagtacaattattatgatat |
2126118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 2146980 - 2147067
Alignment:
| Q |
143 |
atgcatggcatgttgtgaccggtgcaaatgtgtccctctaagaacttattgtaacagagaaaaatgtggcaagtgctacactgatatg |
230 |
Q |
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| T |
2146980 |
atgcatgacatgttgtgatcgctgtcaatgtgtccctcctggaacttatggtaacagagaaaaatgtggcaagtgctacactgatatg |
2147067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 230
Target Start/End: Original strand, 2140665 - 2140828
Alignment:
| Q |
72 |
tgtgggcagattgcattctactatgg--ttataggtgcaaattgcattcaagaaataaattatgcataagagcatgcatggcatgttgtgaccggtgcaa |
169 |
Q |
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|||||||||||||||||| |||||| ||||||||||||| | |||| || || | |||| |||| |||||||||| |||||||||| || ||||| |
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| T |
2140665 |
tgtgggcagattgcattccactatgtatttataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatgttgtgatcgctgcaa |
2140764 |
T |
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| Q |
170 |
atgtgtccctct---aagaacttattgtaacagagaaaaatgtggcaagtgctacactgatatg |
230 |
Q |
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| T |
2140765 |
atgtgtccctcttgatcaaacttatggtaacagggataaatgtggcaaatgctatactgatatg |
2140828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 2125497 - 2125537
Alignment:
| Q |
34 |
acttgtacatagtaattgaattctaagacttgtacatatgt |
74 |
Q |
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| T |
2125497 |
acttgtacatagtaattgaattctaagacttgtacatatgt |
2125537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 230
Target Start/End: Original strand, 23368 - 23531
Alignment:
| Q |
72 |
tgtgggcagattgcattctactatg--gttataggtgcaaattgcattcaagaaataaattatgcataagagcatgcatggcatgttgtgaccggtgcaa |
169 |
Q |
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|||||||||||||||||| |||||| |||||||||||||| | |||| || || | |||| |||| |||||||||| |||||||||| || ||||| |
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| T |
23368 |
tgtgggcagattgcattccactatgtggttataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatgttgtgatcgctgcaa |
23467 |
T |
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| Q |
170 |
atgtgtccctctaag---aacttattgtaacagagaaaaatgtggcaagtgctacactgatatg |
230 |
Q |
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| T |
23468 |
atgtgtccctcttgatcaaacttatggtaacagagaaaaatgtggcaagtgctacactgatatg |
23531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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