View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_26 (Length: 455)
Name: NF6682_2D_low_26
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 40741195 - 40741622
Alignment:
| Q |
1 |
catgaaagagtgaaatgtgcgtgtgttcttgaaatgttagttatacttatgtgaagttggcatggtgaaaacatgctatgttaattgaagatttcaatat |
100 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40741195 |
catgaaagagtgaaatgtgcatgtgttcttgaaattttagttatatttatgtgaagttggcatggtgaaaacatgctaggttaattgaagatttcaatat |
40741294 |
T |
|
| Q |
101 |
ttaacatacaatttcgccacatccaactacaccttctcatttggaactggatcccacgctgtaactgcgttaacgcagtaacaacaacggccttccgatc |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40741295 |
ctaacatacaatttcgccacattcaactacaccttctcatttgaaactggatcccacgctgtaactgcgttaacgcagtaacaacaatggccttccgatc |
40741394 |
T |
|
| Q |
201 |
agaaactaatggttgagatcaaaattgtctgaaactgattgtataaatctgaactgttagatcgcatttatgtggtcgagactgcatgaaactacgtgga |
300 |
Q |
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| T |
40741395 |
agaaactaatggttgagatcaaaactgtctaaaactgattgtataaatctgaactgttagatcacatttatgtggtcgagactg----------tgtgaa |
40741484 |
T |
|
| Q |
301 |
gcagttacaacaggcaatctgggtcctactcannnnnnnnnnnnnnntaattatttcctttctcctaaccacctcatcattcttcttagtgggagatctc |
400 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40741485 |
gcagttacaacaggcaatctgggtcctactc------gtctctctcttaattatttcctttctcctaaccacctcatcattctacttagtgggagatctc |
40741578 |
T |
|
| Q |
401 |
taatctatgtgaaaacaaaattagtagagagatgtgatgtccat |
444 |
Q |
| |
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| T |
40741579 |
taatctttgtgaatataaaattagtagagagatgttatgtccat |
40741622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 262
Target Start/End: Original strand, 12265918 - 12266039
Alignment:
| Q |
142 |
tggaactggatcccacgctgtaactgcgttaacgcagtaacaacaacggc-cttccgatcagaaactaatggttgagatcaaaattgtctgaaactgatt |
240 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | | | || | |||||||||||| ||| |||||||||||||| | | |||| |||||| |
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| T |
12265918 |
tggaactggatcccacgttgtaactgcgttaacgcagtacctgctatgggacgtccgatcagaaattaacggttgagatcaaaactatatgaagctgatt |
12266017 |
T |
|
| Q |
241 |
gtataaatctgaactgttagat |
262 |
Q |
| |
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| T |
12266018 |
gtataaatctgaactgttagat |
12266039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 13411145 - 13411247
Alignment:
| Q |
163 |
aactgcgttaacgcagtaacaacaacggccttccgatcagaaactaatggttgagatcaaaattgtctgaaactgattgtataaatctgaactgttagat |
262 |
Q |
| |
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|||||||||||| ||||||||||||| | || |||| ||| |||||||||||||||||| ||| ||||||| | ||||||||||||||| ||||||| |
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| T |
13411145 |
aactgcgttaactcagtaacaacaactgact----atcaaaaattaatggttgagatcaaaactgtgtgaaactaactgtataaatctgaaccgttagat |
13411240 |
T |
|
| Q |
263 |
cgcattt |
269 |
Q |
| |
|
||||||| |
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|
| T |
13411241 |
cgcattt |
13411247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 30861229 - 30861136
Alignment:
| Q |
141 |
ttggaactggatcccacgctgtaactgcgttaacgcagtaacaacaac-ggccttccgatcagaaactaatggttgagatcaaaattgtctgaa |
233 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||||||||||||| || |||| || ||||| ||| || |||||||||||||| ||| |||| |
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| T |
30861229 |
ttggaactggatcccacgatgtaattgcgttaacgcagtaacaactacgggccgtcagatcaaaaatgaaaggttgagatcaaaactgtgtgaa |
30861136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 7595277 - 7595319
Alignment:
| Q |
143 |
ggaactggatcccacgctgtaactgcgttaacgcagtaacaac |
185 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
7595277 |
ggaactggatcccacgctataactgcgtcaacgcagtaacaac |
7595319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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