View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6682_2D_low_28 (Length: 436)
Name: NF6682_2D_low_28
Description: NF6682_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6682_2D_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 36 - 290
Target Start/End: Complemental strand, 39364167 - 39363907
Alignment:
| Q |
36 |
acactaccctcaaacataaattaaaagcaagtacta--gaaaagataaaggtgttgtagtagccatat----gatttatctcctcttcctgcaagccaca |
129 |
Q |
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| T |
39364167 |
acactaccctcaaacataaattaaaagcaagtactatagaaaagataaaggtgttgtagtagccatatatatgatttatctcctcttcctgcaagccaca |
39364068 |
T |
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| Q |
130 |
acacaataagaaaattaactagtacgaagaaattagttttgatttttaacacatgctttattagcattgataaggctaaattagtaccatgtctgataac |
229 |
Q |
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| T |
39364067 |
acacaataagaaaattaactagtacgaagaaattagttttgattttgaacacatgctttattagcattgataaggctaaattagtaccatgtccgataac |
39363968 |
T |
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| Q |
230 |
tctggaaagaccagaattcatatggaacactgcttcttcgtatatctgaaattcattcatc |
290 |
Q |
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| T |
39363967 |
tctggaaagaccagaattcatatggaacactgcttcttcgtatatctgaaattcattcatc |
39363907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 345 - 424
Target Start/End: Complemental strand, 39363852 - 39363773
Alignment:
| Q |
345 |
acaacctgtttgtttatctgcaaatcgttccttccttctctattccaaaattcaatttcgattctttttcttgtttcatc |
424 |
Q |
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| T |
39363852 |
acaacctgtttgtttatctgcaaatcgttccttccttctctattccaaaattcaatttcgattctttttcttgtttcatc |
39363773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 39362586 - 39362537
Alignment:
| Q |
95 |
gccatatgatttatctcctcttcctgcaagccacaacacaataagaaaat |
144 |
Q |
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| T |
39362586 |
gccatatggtttatctcctcttcctgcaagtcacaacacaagaagaaaat |
39362537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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